mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome
Morgan, Marcos, Much, Christian, DiGiacomo, Monica, Azzi, Chiara, Ivanova, Ivayla, Vitsios, Dimitrios M, Pistolic, Jelena, Collier, Paul, Moreira, Pedro N, Benes, Vladimir, Enright, Anton J, O'Carroll, Dónal
Published in Nature (London) (17.08.2017)
Published in Nature (London) (17.08.2017)
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Journal Article
Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis
Vitsios, Dimitrios M, Davis, Matthew P, van Dongen, Stijn, Enright, Anton J
Published in Nucleic acids research (17.02.2017)
Published in Nucleic acids research (17.02.2017)
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Journal Article
Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests
Vitsios, Dimitrios M, Kentepozidou, Elissavet, Quintais, Leonor, Benito-Gutiérrez, Elia, van Dongen, Stijn, Davis, Matthew P, Enright, Anton J
Published in Nucleic acids research (01.12.2017)
Published in Nucleic acids research (01.12.2017)
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Journal Article
RNA-sequencing analysis of umbilical cord plasma microRNAs from healthy newborns
Brennan, Gary P, Vitsios, Dimitrios M, Casey, Sophie, Looney, Ann-Marie, Hallberg, Boubou, Henshall, David C, Boylan, Geraldine B, Murray, Deirdre M, Mooney, Catherine
Published in PloS one (03.12.2018)
Published in PloS one (03.12.2018)
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Journal Article
In situ functional dissection of RNA cis-regulatory elements by multiplex CRISPR-Cas9 genome engineering
Wu, Qianxin, Ferry, Quentin R V, Baeumler, Toni A, Michaels, Yale S, Vitsios, Dimitrios M, Habib, Omer, Arnold, Roland, Jiang, Xiaowei, Maio, Stefano, Steinkraus, Bruno R, Tapia, Marta, Piazza, Paolo, Xu, Ni, Holländer, Georg A, Milne, Thomas A, Kim, Jin-Soo, Enright, Anton J, Bassett, Andrew R, Fulga, Tudor A
Published in Nature communications (13.12.2017)
Published in Nature communications (13.12.2017)
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Journal Article
Identification of a missense variant in SPDL1 associated with idiopathic pulmonary fibrosis
Dhindsa, Ryan S, Mattsson, Johan, Nag, Abhishek, Wang, Quanli, Wain, Louise V, Allen, Richard, Wigmore, Eleanor M, Ibanez, Kristina, Vitsios, Dimitrios, Deevi, Sri V V, Wasilewski, Sebastian, Karlsson, Maria, Lassi, Glenda, Olsson, Henric, Muthas, Daniel, Monkley, Susan, Mackay, Alex, Murray, Lynne, Young, Simon, Haefliger, Carolina, Maher, Toby M, Belvisi, Maria G, Jenkins, Gisli, Molyneaux, Philip L, Platt, Adam, Petrovski, Slavé
Published in Communications biology (23.03.2021)
Published in Communications biology (23.03.2021)
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Journal Article
DrugnomeAI is an ensemble machine-learning framework for predicting druggability of candidate drug targets
Raies, Arwa, Tulodziecka, Ewa, Stainer, James, Middleton, Lawrence, Dhindsa, Ryan S, Hill, Pamela, Engkvist, Ola, Harper, Andrew R, Petrovski, Slavé, Vitsios, Dimitrios
Published in Communications biology (24.11.2022)
Published in Communications biology (24.11.2022)
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Journal Article
Author Correction: DrugnomeAI is an ensemble machine-learning framework for predicting druggability of candidate drug targets
Raies, Arwa, Tulodziecka, Ewa, Stainer, James, Middleton, Lawrence, Dhindsa, Ryan S, Hill, Pamela, Engkvist, Ola, Harper, Andrew R, Petrovski, Slavé, Vitsios, Dimitrios
Published in Communications biology (11.07.2023)
Published in Communications biology (11.07.2023)
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Journal Article
Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A
Steward, Charles A, Roovers, Jolien, Suner, Marie-Marthe, Gonzalez, Jose M, Uszczynska-Ratajczak, Barbara, Pervouchine, Dmitri, Fitzgerald, Stephen, Viola, Margarida, Stamberger, Hannah, Hamdan, Fadi F, Ceulemans, Berten, Leroy, Patricia, Nava, Caroline, Lepine, Anne, Tapanari, Electra, Keiller, Don, Abbs, Stephen, Sanchis-Juan, Alba, Grozeva, Detelina, Rogers, Anthony S, Diekhans, Mark, Guigó, Roderic, Petryszak, Robert, Minassian, Berge A, Cavalleri, Gianpiero, Vitsios, Dimitrios, Petrovski, Slavé, Harrow, Jennifer, Flicek, Paul, Lucy Raymond, F, Lench, Nicholas J, Jonghe, Peter De, Mudge, Jonathan M, Weckhuysen, Sarah, Sisodiya, Sanjay M, Frankish, Adam
Published in Npj genomic medicine (02.12.2019)
Published in Npj genomic medicine (02.12.2019)
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Gene-SCOUT: identifying genes with similar continuous trait fingerprints from phenome-wide association analyses
Middleton, Lawrence, Harper, Andrew R, Nag, Abhishek, Wang, Quanli, Reznichenko, Anna, Vitsios, Dimitrios, Petrovski, Slavé
Published in Nucleic acids research (06.05.2022)
Published in Nucleic acids research (06.05.2022)
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Journal Article
A minimal role for synonymous variation in human disease
Dhindsa, Ryan S., Wang, Quanli, Vitsios, Dimitrios, Burren, Oliver S., Hu, Fengyuan, DiCarlo, James E., Kruglyak, Leonid, MacArthur, Daniel G., Hurles, Matthew E., Petrovski, Slavé
Published in American journal of human genetics (01.12.2022)
Published in American journal of human genetics (01.12.2022)
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Journal Article
Disease prediction with multi-omics and biomarkers empowers case–control genetic discoveries in the UK Biobank
Garg, Manik, Karpinski, Marcin, Matelska, Dorota, Middleton, Lawrence, Burren, Oliver S., Hu, Fengyuan, Wheeler, Eleanor, Smith, Katherine R., Fabre, Margarete A., Mitchell, Jonathan, O’Neill, Amanda, Ashley, Euan A., Harper, Andrew R., Wang, Quanli, Dhindsa, Ryan S., Petrovski, Slavé, Vitsios, Dimitrios
Published in Nature genetics (11.09.2024)
Published in Nature genetics (11.09.2024)
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Journal Article
Effects of protein-coding variants on blood metabolite measurements and clinical biomarkers in the UK Biobank
Nag, Abhishek, Dhindsa, Ryan S., Middleton, Lawrence, Jiang, Xiao, Vitsios, Dimitrios, Wigmore, Eleanor, Allman, Erik L., Reznichenko, Anna, Carss, Keren, Smith, Katherine R., Wang, Quanli, Challis, Benjamin, Paul, Dirk S., Harper, Andrew R., Petrovski, Slavé
Published in American journal of human genetics (02.03.2023)
Published in American journal of human genetics (02.03.2023)
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Journal Article
A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis
Morgan, Marcos, Kabayama, Yuka, Much, Christian, Ivanova, Ivayla, Di Giacomo, Monica, Auchynnikava, Tatsiana, Monahan, Jack Michael, Vitsios, Dimitrios Michael, Vasiliauskaitė, Lina, Comazzetto, Stefano, Rappsilber, Juri, Allshire, Robin Campbell, Porse, Bo Torben, Enright, Anton James, O'Carroll, Dónal
Published in Cell research (01.03.2019)
Published in Cell research (01.03.2019)
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Journal Article
Exome-Based Rare-Variant Analyses in CKD
Cameron-Christie, Sophia, Wolock, Charles J, Groopman, Emily, Petrovski, Slavé, Kamalakaran, Sitharthan, Povysil, Gundula, Vitsios, Dimitrios, Zhang, Mengqi, Fleckner, Jan, March, Ruth E, Gelfman, Sahar, Marasa, Maddalena, Li, Yifu, Sanna-Cherchi, Simone, Kiryluk, Krzysztof, Allen, Andrew S, Fellström, Bengt C, Haefliger, Carolina, Platt, Adam, Goldstein, David B, Gharavi, Ali G
Published in Journal of the American Society of Nephrology (01.06.2019)
Published in Journal of the American Society of Nephrology (01.06.2019)
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