Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
O’Toole, Áine, Scher, Emily, Underwood, Anthony, Jackson, Ben, Hill, Verity, McCrone, John T, Colquhoun, Rachel, Ruis, Chris, Abu-Dahab, Khalil, Taylor, Ben, Yeats, Corin, du Plessis, Louis, Maloney, Daniel, Medd, Nathan, Attwood, Stephen W, Aanensen, David M, Holmes, Edward C, Pybus, Oliver G, Rambaut, Andrew
Published in Virus evolution (01.11.2021)
Published in Virus evolution (01.11.2021)
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Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Suchard, Marc A, Lemey, Philippe, Baele, Guy, Ayres, Daniel L, Drummond, Alexei J, Rambaut, Andrew
Published in Virus evolution (01.01.2018)
Published in Virus evolution (01.01.2018)
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Temporal signal and the phylodynamic threshold of SARS-CoV-2
Duchene, Sebastian, Featherstone, Leo, Haritopoulou-Sinanidou, Melina, Rambaut, Andrew, Lemey, Philippe, Baele, Guy
Published in Virus Evolution (01.07.2020)
Published in Virus Evolution (01.07.2020)
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RDP4: Detection and analysis of recombination patterns in virus genomes
Martin, Darren P., Murrell, Ben, Golden, Michael, Khoosal, Arjun, Muhire, Brejnev
Published in Virus evolution (26.05.2015)
Published in Virus evolution (26.05.2015)
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Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
Rambaut, Andrew, Lam, Tommy T., Max Carvalho, Luiz, Pybus, Oliver G.
Published in Virus evolution (01.01.2016)
Published in Virus evolution (01.01.2016)
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RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets
Martin, Darren P, Varsani, Arvind, Roumagnac, Philippe, Botha, Gerrit, Maslamoney, Suresh, Schwab, Tiana, Kelz, Zena, Kumar, Venkatesh, Murrell, Ben
Published in Virus evolution (01.01.2021)
Published in Virus evolution (01.01.2021)
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Global patterns in coronavirus diversity
Anthony, Simon J., Johnson, Christine K., Greig, Denise J., Kramer, Sarah, Che, Xiaoyu, Wells, Heather, Hicks, Allison L., Joly, Damien O., Wolfe, Nathan D., Daszak, Peter, Karesh, William, Lipkin, W. I., Morse, Stephen S., Mazet, Jonna A. K., Goldstein, Tracey
Published in Virus Evolution (01.01.2017)
Published in Virus Evolution (01.01.2017)
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Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation
Charre, Caroline, Ginevra, Christophe, Sabatier, Marina, Regue, Hadrien, Destras, Grégory, Brun, Solenne, Burfin, Gwendolyne, Scholtes, Caroline, Morfin, Florence, Valette, Martine, Lina, Bruno, Bal, Antonin, Josset, Laurence
Published in Virus evolution (01.07.2020)
Published in Virus evolution (01.07.2020)
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The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK
Hill, Verity, Du Plessis, Louis, Peacock, Thomas P, Aggarwal, Dinesh, Colquhoun, Rachel, Carabelli, Alesandro M, Ellaby, Nicholas, Gallagher, Eileen, Groves, Natalie, Jackson, Ben, McCrone, J T, O’Toole, Áine, Price, Anna, Sanderson, Theo, Scher, Emily, Southgate, Joel, Volz, Erik, Barclay, Wendy S, Barrett, Jeffrey C, Chand, Meera, Connor, Thomas, Goodfellow, Ian, Gupta, Ravindra K, Harrison, Ewan M, Loman, Nicholas, Myers, Richard, Robertson, David L, Pybus, Oliver G, Rambaut, Andrew
Published in Virus evolution (01.12.2022)
Published in Virus evolution (01.12.2022)
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An emergent clade of SARS-CoV-2 linked to returned travellers from Iran
Eden, John-Sebastian, Rockett, Rebecca, Carter, Ian, Rahman, Hossinur, de Ligt, Joep, Hadfield, James, Storey, Matthew, Ren, Xiaoyun, Tulloch, Rachel, Basile, Kerri, Wells, Jessica, Byun, Roy, Gilroy, Nicky, O’Sullivan, Matthew V, Sintchenko, Vitali, Chen, Sharon C, Maddocks, Susan, Sorrell, Tania C, Holmes, Edward C, Dwyer, Dominic E, Kok, Jen
Published in Virus Evolution (01.01.2020)
Published in Virus Evolution (01.01.2020)
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Cenote-Taker 2 democratizes virus discovery and sequence annotation
Tisza, Michael J, Belford, Anna K, Domínguez-Huerta, Guillermo, Bolduc, Benjamin, Buck, Christopher B
Published in Virus evolution (01.01.2021)
Published in Virus evolution (01.01.2021)
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Recurrent SARS-CoV-2 mutations in immunodeficient patients
Wilkinson, S A J, Richter, Alex, Casey, Anna, Osman, Husam, Mirza, Jeremy D, Stockton, Joanne, Quick, Josh, Ratcliffe, Liz, Sparks, Natalie, Cumley, Nicola, Poplawski, Radoslaw, Nicholls, Samuel N, Kele, Beatrix, Harris, Kathryn, Peacock, Thomas P, Loman, Nicholas J
Published in Virus evolution (01.12.2022)
Published in Virus evolution (01.12.2022)
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The virome from a collection of endomycorrhizal fungi reveals new viral taxa with unprecedented genome organization
Sutela, Suvi, Forgia, Marco, Vainio, Eeva J, Chiapello, Marco, Daghino, Stefania, Vallino, Marta, Martino, Elena, Girlanda, Mariangela, Perotto, Silvia, Turina, Massimo
Published in Virus evolution (01.07.2020)
Published in Virus evolution (01.07.2020)
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A threat from both sides: Multiple introductions of genetically distinct H5 HPAI viruses into Canada via both East Asia-Australasia/Pacific and Atlantic flyways
Alkie, Tamiru N, Lopes, Sara, Hisanaga, Tamiko, Xu, Wanhong, Suderman, Matthew, Koziuk, Janice, Fisher, Mathew, Redford, Tony, Lung, Oliver, Joseph, Tomy, Himsworth, Chelsea G, Brown, Ian H, Bowes, Victoria, Lewis, Nicola S, Berhane, Yohannes
Published in Virus evolution (01.12.2022)
Published in Virus evolution (01.12.2022)
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Intra-host evolution during SARS-CoV-2 prolonged infection
Voloch, Carolina M, da Silva Francisco Jr, Ronaldo, de Almeida, Luiz G P, Brustolini, Otavio J, Cardoso, Cynthia C, Gerber, Alexandra L, Guimarães, Ana Paula de C, Leitão, Isabela de Carvalho, Mariani, Diana, Ota, Victor Akira, Lima, Cristiano X, Teixeira, Mauro M, Dias, Ana Carolina F, Galliez, Rafael Mello, Faffe, Débora Souza, Pôrto, Luís Cristóvão, Aguiar, Renato S, Castiñeira, Terezinha M P P, Ferreira, Orlando C, Tanuri, Amilcar, R de Vasconcelos, Ana Tereza
Published in Virus evolution (01.11.2021)
Published in Virus evolution (01.11.2021)
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Replacement of the Gamma by the Delta variant in Brazil: Impact of lineage displacement on the ongoing pandemic
Giovanetti, Marta, Fonseca, Vagner, Wilkinson, Eduan, Tegally, Houriiyah, San, Emmanuel James, Althaus, Christian L, Xavier, Joilson, Nanev Slavov, Svetoslav, Viala, Vincent Louis, Ranieri Jerônimo Lima, Alex, Ribeiro, Gabriela, Souza-Neto, Jayme A, Fukumasu, Heidge, Lehmann Coutinho, Luiz, Venancio da Cunha, Rivaldo, Freitas, Carla, Campelo de A e Melo, Carlos F, Navegantes de Araújo, Wildo, Do Carmo Said, Rodrigo Fabiano, Almiron, Maria, de Oliveira, Tulio, Coccuzzo Sampaio, Sandra, Elias, Maria Carolina, Covas, Dimas Tadeu, Holmes, Edward C, Lourenço, José, Kashima, Simone, de Alcantara, Luiz Carlos Junior
Published in Virus evolution (2022)
Published in Virus evolution (2022)
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