by Palla, Giovanni, Spitzer, Hannah, Klein, Michal, Fischer, David, Schaar, Anna Christina, Kuemmerle, Louis Benedikt, Rybakov, Sergei, Ibarra, Ignacio L, Holmberg, Olle, Virshup, Isaac, Lotfollahi, Mohammad, Richter, Sabrina, Theis, Fabian J
Published in Nature methods (01.02.2022)

by Sarfraz, Irzam, Wang, Yichen, Shastry, Amulya, Teh, Wei Kheng, Sokolov, Artem, Herb, Brian R., Creasy, Heather H., Virshup, Isaac, Dries, Ruben, Degatano, Kylee, Mahurkar, Anup, Schnell, Daniel J., Madrigal, Pedro, Hilton, Jason, Gehlenborg, Nils, Tickle, Timothy, Campbell, Joshua D.
Published in Genome Biology (01.08.2024)

by Ovchinnikov, Dmitry A., Korn, Othmar, Virshup, Isaac, Wells, Christine A., Wolvetang, Ernst J.
Published in Stem cell reports (10.07.2018)

by Minoda, Yoshihito, Virshup, Isaac, Leal Rojas, Ingrid, Haigh, Oscar, Wong, Yide, Miles, John J, Wells, Christine A, Radford, Kristen J
Published in Frontiers in immunology (30.10.2017)

by Virshup, Isaac, Bredikhin, Danila, Heumos, Lukas, Palla, Giovanni, Sturm, Gregor, Gayoso, Adam, Kats, Ilia, Koutrouli, Mikaela, Berger, Bonnie, Pe'er, Dana, Regev, Aviv, Teichmann, Sarah A, Finotello, Francesca, Wolf, F Alexander, Yosef, Nir, Stegle, Oliver, Theis, Fabian J
Published in Nature biotechnology (01.05.2023)

by Heumos, Lukas, Schaar, Anna C, Lance, Christopher, Litinetskaya, Anastasia, Drost, Felix, Zappia, Luke, Lücken, Malte D, Strobl, Daniel C, Henao, Juan, Curion, Fabiola, Schiller, Herbert B, Theis, Fabian J
Published in Nature reviews. Genetics (01.08.2023)

by Bower, Neil I, Koltowska, Katarzyna, Pichol-Thievend, Cathy, Virshup, Isaac, Paterson, Scott, Lagendijk, Anne K, Wang, Weili, Lindsey, Benjamin W, Bent, Stephen J, Baek, Sungmin, Rondon-Galeano, Maria, Hurley, Daniel G, Mochizuki, Naoki, Simons, Cas, Francois, Mathias, Wells, Christine A, Kaslin, Jan, Hogan, Benjamin M
Published in Nature neuroscience (01.06.2017)

by Marconato, Luca, Palla, Giovanni, Yamauchi, Kevin A, Virshup, Isaac, Heidari, Elyas, Treis, Tim, Vierdag, Wouter-Michiel, Toth, Marcella, Stockhaus, Sonja, Shrestha, Rahul B, Rombaut, Benjamin, Pollaris, Lotte, Lehner, Laurens, Vöhringer, Harald, Kats, Ilia, Saeys, Yvan, Saka, Sinem K, Huber, Wolfgang, Gerstung, Moritz, Moore, Josh, Theis, Fabian J, Stegle, Oliver
Published in Nature methods (20.03.2024)

by Virshup, Isaac, Bredikhin, Danila, Heumos, Lukas, Palla, Giovanni, Sturm, Gregor, Gayoso, Adam, Kats, Ilia, Koutrouli, Mikaela, Angerer, Philipp, Bergen, Volker, Boyeau, Pierre, Büttner, Maren, Eraslan, Gokcen, Fischer, David, Frank, Max, Hong, Justin, Klein, Michal, Lange, Marius, Lopez, Romain, Lotfollahi, Mohammad, Luecken, Malte D, Ramirez, Fidel, Regier, Jeffrey, Rybakov, Sergei, Schaar, Anna C, Valiollah Pour Amiri, Valeh, Weiler, Philipp, Xing, Galen, Berger, Bonnie, Pe’er, Dana, Regev, Aviv, Teichmann, Sarah A, Finotello, Francesca, Wolf, F. Alexander, Yosef, Nir, Stegle, Oliver, Theis, Fabian J
Published in Nature biotechnology (01.05.2023)

by Moore, Josh, Basurto-Lozada, Daniela, Besson, Sébastien, Bogovic, John, Bragantini, Jordão, Brown, Eva M., Burel, Jean-Marie, Casas Moreno, Xavier, de Medeiros, Gustavo, Diel, Erin E., Gault, David, Ghosh, Satrajit S., Gold, Ilan, Halchenko, Yaroslav O., Hartley, Matthew, Horsfall, Dave, Keller, Mark S., Kittisopikul, Mark, Kovacs, Gabor, Küpcü Yoldaş, Aybüke, Kyoda, Koji, le Tournoulx de la Villegeorges, Albane, Li, Tong, Liberali, Prisca, Lindner, Dominik, Linkert, Melissa, Lüthi, Joel, Maitin-Shepard, Jeremy, Manz, Trevor, Marconato, Luca, McCormick, Matthew, Lange, Merlin, Mohamed, Khaled, Moore, William, Norlin, Nils, Ouyang, Wei, Özdemir, Bugra, Palla, Giovanni, Pape, Constantin, Pelkmans, Lucas, Pietzsch, Tobias, Preibisch, Stephan, Prete, Martin, Rzepka, Norman, Samee, Sameeul, Schaub, Nicholas, Sidky, Hythem, Solak, Ahmet Can, Stirling, David R., Striebel, Jonathan, Tischer, Christian, Toloudis, Daniel, Virshup, Isaac, Walczysko, Petr, Watson, Alan M., Weisbart, Erin, Wong, Frances, Yamauchi, Kevin A., Bayraktar, Omer, Cimini, Beth A., Gehlenborg, Nils, Haniffa, Muzlifah, Hotaling, Nathan, Onami, Shuichi, Royer, Loic A., Saalfeld, Stephan, Stegle, Oliver, Theis, Fabian J., Swedlow, Jason R.
Published in Histochemistry and cell biology (01.09.2023)

by Heumos, Lukas, Ehmele, Philipp, Treis, Tim, Upmeier Zu Belzen, Julius, Roellin, Eljas, May, Lilly, Namsaraeva, Altana, Horlava, Nastassya, Shitov, Vladimir A, Zhang, Xinyue, Zappia, Luke, Knoll, Rainer, Lang, Niklas J, Hetzel, Leon, Virshup, Isaac, Sikkema, Lisa, Curion, Fabiola, Eils, Roland, Schiller, Herbert B, Hilgendorff, Anne, Theis, Fabian J
Published in Nature medicine (12.09.2024)

by Wang, Yichen, Sarfraz, Irzam, Teh, Wei Kheng, Sokolov, Artem, Herb, Brian R, Creasy, Heather H, Virshup, Isaac, Dries, Ruben, Degatano, Kylee, Mahurkar, Anup, Schnell, Daniel J, Madrigal, Pedro, Hilton, Jason, Gehlenborg, Nils, Tickle, Timothy, Campbell, Joshua D
Published in bioRxiv (07.03.2023)

by Moore, Josh, Basurto-Lozada, Daniela, Besson, Sébastien, Bogovic, John, Bragantini, Jordão, Brown, Eva M, Burel, Jean-Marie, Moreno, Xavier Casas, de Medeiros, Gustavo, Diel, Erin E, Gault, David, Ghosh, Satrajit S, Gold, Ilan, Halchenko, Yaroslav O, Hartley, Matthew, Horsfall, Dave, Keller, Mark S, Kittisopikul, Mark, Kovacs, Gabor, Yoldaş, Aybüke Küpcü, Kyoda, Koji, de la Villegeorges, Albane le Tournoulx, Li, Tong, Liberali, Prisca, Lindner, Dominik, Linkert, Melissa, Lüthi, Joel, Maitin-Shepard, Jeremy, Manz, Trevor, Marconato, Luca, McCormick, Matthew, Lange, Merlin, Mohamed, Khaled, Moore, William, Norlin, Nils, Ouyang, Wei, Özdemir, Bugra, Palla, Giovanni, Pape, Constantin, Pelkmans, Lucas, Pietzsch, Tobias, Preibisch, Stephan, Prete, Martin, Rzepka, Norman, Samee, Sameeul, Schaub, Nicholas, Sidky, Hythem, Solak, Ahmet Can, Stirling, David R, Striebel, Jonathan, Tischer, Christian, Toloudis, Daniel, Virshup, Isaac, Walczysko, Petr, Watson, Alan M, Weisbart, Erin, Wong, Frances, Yamauchi, Kevin A, Bayraktar, Omer, Cimini, Beth A, Gehlenborg, Nils, Haniffa, Muzlifah, Hotaling, Nathan, Onami, Shuichi, Royer, Loic A, Saalfeld, Stephan, Stegle, Oliver, Theis, Fabian J, Swedlow, Jason R
Published in bioRxiv : the preprint server for biology (07.05.2023)

by Virshup, Isaac, Rybakov, Sergei, Theis, Fabian J, Angerer, Philipp, Wolf, F Alexander
Published in bioRxiv (19.12.2021)

by Virshup, Isaac, Choi, Jarny, Kim-Anh Lê Cao, Wells, Christine A
Published in bioRxiv (09.12.2020)

by Palla, Giovanni, Spitzer, Hannah, Klein, Michal, Fischer, David, Schaar, Anna Christina, Louis Benedikt Kuemmerle, Rybakov, Sergei, Ibarra, Ignacio L, Holmberg, Olle, Virshup, Isaac, Lotfollahi, Mohammad, Richter, Sabrina, Theis, Fabian J
Published in bioRxiv (20.02.2021)

by Moore, Josh, Basurto-Lozada, Daniela, Besson, Sébastien, Bogovic, John, Brown, Eva M, Jean-Marie Burel, De Medeiros, Gustavo, Diel, Erin E, Gault, David, Ghosh, Satrajit S, Gold, Ilan, Halchenko, Yaroslav O, Hartley, Matthew, Horsfall, Dave, Keller, Mark S, Kittisopikul, Mark, Kovacs, Gabor, Yoldaş, Aybüke Küpcü, Albane Le Tournoulx De La Villegeorges, Li, Tong, Liberali, Prisca, Linkert, Melissa, Lindner, Dominik, Lüthi, Joel, Maitin-Shepard, Jeremy, Manz, Trevor, Mccormick, Matthew, Mohamed, Khaled, Moore, William, Özdemir, Bugra, Pape, Constantin, Lucas Pelkmans, Prete, Martin, Pietzsch, Tobias, Preibisch, Stephan, Rzepka, Norman, Stirling, David R, Striebel, Jonathan, Tischer, Christian, Toloudis, Daniel, Walczysko, Petr, Watson, Alan M, Wong, Frances, Yamauchi, Kevin A, Bayraktar, Omer, Haniffa, Muzlifah, Saalfeld, Stephan, Swedlow, Jason R
Published in bioRxiv (25.02.2023)