MorphoFeatures for unsupervised exploration of cell types, tissues, and organs in volume electron microscopy
Zinchenko, Valentyna, Hugger, Johannes, Uhlmann, Virginie, Arendt, Detlev, Kreshuk, Anna
Published in eLife (16.02.2023)
Published in eLife (16.02.2023)
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Journal Article
A biologist's guide to planning and performing quantitative bioimaging experiments
Senft, Rebecca A, Diaz-Rohrer, Barbara, Colarusso, Pina, Swift, Lucy, Jamali, Nasim, Jambor, Helena, Pengo, Thomas, Brideau, Craig, Llopis, Paula Montero, Uhlmann, Virginie, Kirk, Jason, Gonzales, Kevin Andrew, Bankhead, Peter, Evans, 3rd, Edward L, Eliceiri, Kevin W, Cimini, Beth A
Published in PLoS biology (27.06.2023)
Published in PLoS biology (27.06.2023)
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Journal Article
Editorial: Methods and Tools for Bioimage Analysis
Levet, Florian, Uhlmann, Virginie, Jug, Florian
Published in Frontiers in computer science (Lausanne) (30.05.2022)
Published in Frontiers in computer science (Lausanne) (30.05.2022)
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Journal Article
μMatch: 3D Shape Correspondence for Biological Image Data
Klatzow, James, Dalmasso, Giovanni, Martínez-Abadías, Neus, Sharpe, James, Uhlmann, Virginie
Published in Frontiers in computer science (Lausanne) (15.02.2022)
Published in Frontiers in computer science (Lausanne) (15.02.2022)
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Journal Article
BioModels’ Model of the Year 2023
Malik Sheriff, Rahuman S., Asari, Hiroki, Hermjakob, Henning, Huber, Wolfgang, Quail, Thomas, Santos, Silvia D. M., Smith, Amber M., Uhlmann, Virginie
Published in Frontiers in Systems Biology (Online) (27.02.2024)
Published in Frontiers in Systems Biology (Online) (27.02.2024)
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Journal Article
Splinedist: Automated Cell Segmentation With Spline Curves
Mandal, Soham, Uhlmann, Virginie
Published in 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) (13.04.2021)
Published in 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) (13.04.2021)
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Conference Proceeding
Hermite Snakes With Control of Tangents
Uhlmann, Virginie, Fageot, Julien, Unser, Michael
Published in IEEE transactions on image processing (01.06.2016)
Published in IEEE transactions on image processing (01.06.2016)
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Journal Article
Aura-Net: Robust Segmentation Of Phase-Contrast Microscopy Images with Few Annotations
Cohen, Ethan, Uhlmann, Virginie
Published in 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) (13.04.2021)
Published in 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) (13.04.2021)
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Conference Proceeding
Deep learning for bioimage analysis in developmental biology
Hallou, Adrien, Yevick, Hannah G, Dumitrascu, Bianca, Uhlmann, Virginie
Published in Development (Cambridge) (15.09.2021)
Published in Development (Cambridge) (15.09.2021)
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Journal Article
Gaussian and sparse processes are limits of generalized Poisson processes
Fageot, Julien, Uhlmann, Virginie, Unser, Michael
Published in Applied and computational harmonic analysis (01.05.2020)
Published in Applied and computational harmonic analysis (01.05.2020)
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Journal Article
Automated classification of immunostaining patterns in breast tissue from the human protein atlas
Swamidoss, Issac Niwas, Kårsnäs, Andreas, Uhlmann, Virginie, Ponnusamy, Palanisamy, Kampf, Caroline, Simonsson, Martin, Wählby, Carolina, Strand, Robin
Published in Journal of pathology informatics (2013)
Published in Journal of pathology informatics (2013)
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Journal Article
Multiresolution Subdivision Snakes
Badoual, Anais, Schmitter, Daniel, Uhlmann, Virginie, Unser, Michael
Published in IEEE transactions on image processing (01.03.2017)
Published in IEEE transactions on image processing (01.03.2017)
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Journal Article
Made to measure: An introduction to quantifying microscopy data in the life sciences
Culley, Siân, Caballero, Alicia Cuber, Burden, Jemima J, Uhlmann, Virginie
Published in Journal of microscopy (Oxford) (01.07.2024)
Published in Journal of microscopy (Oxford) (01.07.2024)
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Journal Article
Support and approximation properties of Hermite splines
Fageot, Julien, Aziznejad, Shayan, Unser, Michael, Uhlmann, Virginie
Published in Journal of computational and applied mathematics (01.04.2020)
Published in Journal of computational and applied mathematics (01.04.2020)
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Journal Article
Steer’n’Detect: fast 2D template detection with accurate orientation estimation
Uhlmann, Virginie, Püspöki, Zsuzsanna, Depeursinge, Adrien, Unser, Michael, Sage, Daniel, Fageot, Julien
Published in Bioinformatics (26.05.2022)
Published in Bioinformatics (26.05.2022)
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Journal Article
Maximally Localized Radial Profiles for Tight Steerable Wavelet Frames
Pad, Pedram, Uhlmann, Virginie, Unser, Michael
Published in IEEE transactions on image processing (01.05.2016)
Published in IEEE transactions on image processing (01.05.2016)
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Journal Article
Simulating structurally variable nuclear pore complexes for microscopy
Theiss, Maria, Hériché, Jean-Karim, Russell, Craig, Helekal, David, Soppitt, Alisdair, Ries, Jonas, Ellenberg, Jan, Brazma, Alvis, Uhlmann, Virginie
Published in Bioinformatics (Oxford, England) (03.10.2023)
Published in Bioinformatics (Oxford, England) (03.10.2023)
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Journal Article