SIMBA: single-cell embedding along with features
Chen, Huidong, Ryu, Jayoung, Vinyard, Michael E, Lerer, Adam, Pinello, Luca
Published in Nature methods (01.06.2024)
Published in Nature methods (01.06.2024)
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Journal Article
Assessment of computational methods for the analysis of single-cell ATAC-seq data
Chen, Huidong, Lareau, Caleb, Andreani, Tommaso, Vinyard, Michael E, Garcia, Sara P, Clement, Kendell, Andrade-Navarro, Miguel A, Buenrostro, Jason D, Pinello, Luca
Published in Genome Biology (18.11.2019)
Published in Genome Biology (18.11.2019)
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singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality
Stein, David F, Chen, Huidong, Vinyard, Michael E, Qin, Qian, Combs, Rebecca D, Zhang, Qian, Pinello, Luca
Published in Frontiers in genetics (28.10.2021)
Published in Frontiers in genetics (28.10.2021)
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CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML
Vinyard, Michael E., Su, Cindy, Siegenfeld, Allison P., Waterbury, Amanda L., Freedy, Allyson M., Gosavi, Pallavi M., Park, Yongho, Kwan, Eugene E., Senzer, Benjamin D., Doench, John G., Bauer, Daniel E., Pinello, Luca, Liau, Brian B.
Published in Nature chemical biology (01.05.2019)
Published in Nature chemical biology (01.05.2019)
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Journal Article
CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML
Vinyard, Michael E, Su, Cindy, Siegenfeld, Allison P, Waterbury, Amanda L, Freedy, Allyson M, Gosavi, Pallavi M, Park, Yongho, Kwan, Eugene E, Senzer, Benjamin D, Doench, John G, Bauer, Daniel E, Pinello, Luca, Liau, Brian B
Published in Nature chemical biology (01.05.2019)
Published in Nature chemical biology (01.05.2019)
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An autoinhibitory switch of the LSD1 disordered region controls enhancer silencing
Waterbury, Amanda L., Kwok, Hui Si, Lee, Ceejay, Narducci, Domenic N., Freedy, Allyson M., Su, Cindy, Raval, Shaunak, Reiter, Andrew H., Hawkins, William, Lee, Kwangwoon, Li, Jiaming, Hoenig, Samuel M., Vinyard, Michael E., Cole, Philip A., Hansen, Anders S., Carr, Steven A., Papanastasiou, Malvina, Liau, Brian B.
Published in Molecular cell (20.06.2024)
Published in Molecular cell (20.06.2024)
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Defining and benchmarking open problems in single-cell analysis
Luecken, Malte D, Gigante, Scott, Burkhardt, Daniel B, Cannoodt, Robrecht, Strobl, Daniel C, Markov, Nikolay S, Zappia, Luke, Palla, Giovanni, Lewis, Wesley, Dimitrov, Daniel, Vinyard, Michael E, Magruder, D S, Andersson, Alma, Dann, Emma, Qin, Qian, Otto, Dominik J, Klein, Michal, Botvinnik, Olga Borisovna, Deconinck, Louise, Waldrant, Kai, Bloom, Jonathan M, Pisco, Angela Oliveira, Saez-Rodriguez, Julio, Wulsin, Drausin, Pinello, Luca, Saeys, Yvan, Theis, Fabian J, Krishnaswamy, Smita
Published in Research square (04.04.2024)
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Published in Research square (04.04.2024)
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A molecular glue approach to control the half-life of CRISPR-based technologies
Sreekanth, Vedagopuram, Jan, Max, Zhao, Kevin T, Lim, Donghyun, Davis, Jessie R, McConkey, Marie, Kovalcik, Veronica, Barkal, Sam, Law, Benjamin K, Fife, James, Tian, Ruilin, Vinyard, Michael E, Becerra, Basheer, Kampmann, Martin Edward, Sherwood, Richard I, Pinello, Luca, Liu, David R, Ebert, Benjamin L, Choudhary, Amit
Published in bioRxiv (20.03.2023)
Published in bioRxiv (20.03.2023)
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SIMBA: SIngle-cell eMBedding Along with features
Chen, Huidong, Ryu, Jayoung, Vinyard, Michael E, Lerer, Adam, Pinello, Luca
Published in bioRxiv (03.04.2022)
Published in bioRxiv (03.04.2022)
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