Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
Liu, Fan, Lössl, Philip, Scheltema, Richard, Viner, Rosa, Heck, Albert J R
Published in Nature communications (19.05.2017)
Published in Nature communications (19.05.2017)
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TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples
Li, Jiaming, Van Vranken, Jonathan G, Pontano Vaites, Laura, Schweppe, Devin K, Huttlin, Edward L, Etienne, Chris, Nandhikonda, Premchendar, Viner, Rosa, Robitaille, Aaron M, Thompson, Andrew H, Kuhn, Karsten, Pike, Ian, Bomgarden, Ryan D, Rogers, John C, Gygi, Steven P, Paulo, Joao A
Published in Nature methods (01.04.2020)
Published in Nature methods (01.04.2020)
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A draft map of the mouse pluripotent stem cell spatial proteome
Christoforou, Andy, Mulvey, Claire M, Breckels, Lisa M, Geladaki, Aikaterini, Hurrell, Tracey, Hayward, Penelope C, Naake, Thomas, Gatto, Laurent, Viner, Rosa, Martinez Arias, Alfonso, Lilley, Kathryn S
Published in Nature communications (12.01.2016)
Published in Nature communications (12.01.2016)
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Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes
Michalski, Annette, Damoc, Eugen, Lange, Oliver, Denisov, Eduard, Nolting, Dirk, Müller, Mathias, Viner, Rosa, Schwartz, Jae, Remes, Philip, Belford, Michael, Dunyach, Jean-Jacques, Cox, Juergen, Horning, Stevan, Mann, Matthias, Makarov, Alexander
Published in Molecular & cellular proteomics (01.03.2012)
Published in Molecular & cellular proteomics (01.03.2012)
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Journal Article
The paracaspase MALT1 cleaves HOIL1 reducing linear ubiquitination by LUBAC to dampen lymphocyte NF-κB signalling
Klein, Theo, Fung, Shan-Yu, Renner, Florian, Blank, Michael A, Dufour, Antoine, Kang, Sohyeong, Bolger-Munro, Madison, Scurll, Joshua M, Priatel, John J, Schweigler, Patrick, Melkko, Samu, Gold, Michael R, Viner, Rosa I, Régnier, Catherine H, Turvey, Stuart E, Overall, Christopher M
Published in Nature communications (03.11.2015)
Published in Nature communications (03.11.2015)
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Journal Article
An allosteric MALT1 inhibitor is a molecular corrector rescuing function in an immunodeficient patient
Quancard, Jean, Klein, Theo, Fung, Shan-Yu, Renatus, Martin, Hughes, Nicola, Israël, Laura, Priatel, John J, Kang, Sohyeong, Blank, Michael A, Viner, Rosa I, Blank, Jutta, Schlapbach, Achim, Erbel, Paul, Kizhakkedathu, Jayachandran, Villard, Frédéric, Hersperger, René, Turvey, Stuart E, Eder, Joerg, Bornancin, Frédéric, Overall, Christopher M
Published in Nature chemical biology (01.03.2019)
Published in Nature chemical biology (01.03.2019)
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Journal Article
Glycoproteomic Analysis of the Secretome of Human Endothelial Cells
Yin, Xiaoke, Bern, Marshall, Xing, Qiuru, Ho, Jenny, Viner, Rosa, Mayr, Manuel
Published in Molecular & cellular proteomics (01.04.2013)
Published in Molecular & cellular proteomics (01.04.2013)
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Journal Article
Proteomic Quantification and Site-Mapping of S‑Nitrosylated Proteins Using Isobaric iodoTMT Reagents
Qu, Zhe, Meng, Fanjun, Bomgarden, Ryan D, Viner, Rosa I, Li, Jilong, Rogers, John C, Cheng, Jianlin, Greenlief, C. Michael, Cui, Jiankun, Lubahn, Dennis B, Sun, Grace Y, Gu, Zezong
Published in Journal of proteome research (03.07.2014)
Published in Journal of proteome research (03.07.2014)
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Journal Article
Author Correction: Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology
Filandr, Frantisek, Sarpe, Vladimir, Raval, Shaunak, Crowder, D Alex, Khan, Morgan F, Douglas, Pauline, Coales, Stephen, Viner, Rosa, Syed, Aleem, Tainer, John A, Lees-Miller, Susan P, Schriemer, David C
Published in Nature communications (02.04.2024)
Published in Nature communications (02.04.2024)
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Journal Article
Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology
Filandr, Frantisek, Sarpe, Vladimir, Raval, Shaunak, Crowder, D Alex, Khan, Morgan F, Douglas, Pauline, Coales, Stephen, Viner, Rosa, Syed, Aleem, Tainer, John A, Lees-Miller, Susan P, Schriemer, David C
Published in Nature communications (11.03.2024)
Published in Nature communications (11.03.2024)
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Journal Article
Quantitative proteomics and terminomics to elucidate the role of ubiquitination and proteolysis in adaptive immunity
Klein, Theo, Viner, Rosa I., Overall, Christopher M.
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (28.10.2016)
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (28.10.2016)
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Journal Article
Glycoproteomic Analysis of the Aortic Extracellular Matrix in Marfan Patients
Yin (Chinese Character), Xiaoke, Wanga, Shaynah, Fellows, Adam L, Barallobre-Barreiro, Javier, Lu, Ruifang, Davaapil, Hongorzul, Franken, Romy, Fava, Marika, Baig, Ferheen, Skroblin, Philipp, Xing, Qiuru, Koolbergen, David R, Groenink, Maarten, Zwinderman, Aeilko H, Balm, Ron, de Vries, Carlie J.M, Mulder, Barbara J.M, Viner, Rosa, Jahangiri, Marjan, Reinhardt, Dieter P, Sinha, Sanjay, de Waard, Vivian, Mayr, Manuel
Published in Arteriosclerosis, thrombosis, and vascular biology (01.09.2019)
Published in Arteriosclerosis, thrombosis, and vascular biology (01.09.2019)
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High Performance Anion Exchange and Hydrophilic Interaction Liquid Chromatography Approaches for Comprehensive Mass Spectrometry-Based Characterization of the N‑Glycome of a Recombinant Human Erythropoietin
Szabo, Zoltan, Thayer, James R, Reusch, Dietmar, Agroskin, Yury, Viner, Rosa, Rohrer, Jeff, Patil, Sachin P, Krawitzky, Michael, Huhmer, Andreas, Avdalovic, Nebojsa, Khan, Shaheer H, Liu, Yan, Pohl, Christopher
Published in Journal of proteome research (06.04.2018)
Published in Journal of proteome research (06.04.2018)
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Mobile barrier mechanisms for Na + -coupled symport in an MFS sugar transporter
Hariharan, Parameswaran, Shi, Yuqi, Katsube, Satoshi, Willibal, Katleen, Burrows, Nathan D, Mitchell, Patrick, Bakhtiiari, Amirhossein, Stanfield, Samantha, Pardon, Els, Kaback, H Ronald, Liang, Ruibin, Steyaert, Jan, Viner, Rosa, Guan, Lan
Published in eLife (21.02.2024)
Published in eLife (21.02.2024)
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Production and characterization of an AAV1-VP3-only capsid: An analytical benchmark standard
Mietzsch, Mario, Liu, Weijing, Ma, Ke, Bennett, Antonette, Nelson, Austin R., Gliwa, Keely, Chipman, Paul, Fu, Xiaofeng, Bechler, Shane, McKenna, Robert, Viner, Rosa
Published in Molecular therapy. Methods & clinical development (08.06.2023)
Published in Molecular therapy. Methods & clinical development (08.06.2023)
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Journal Article
Breast tumors educate the proteome of stromal tissue in an individualized but coordinated manner
Wang, Xuya, Mooradian, Arshag D, Erdmann-Gilmore, Petra, Zhang, Qiang, Viner, Rosa, Davies, Sherri R, Huang, Kuan-Lin, Bomgarden, Ryan, Van Tine, Brian A, Shao, Jieya, Ding, Li, Li, Shunqiang, Ellis, Matthew J, Rogers, John C, Townsend, R Reid, Fenyö, David, Held, Jason M
Published in Science signaling (08.08.2017)
Published in Science signaling (08.08.2017)
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