Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
Searle, Brian C., Pino, Lindsay K., Egertson, Jarrett D., Ting, Ying S., Lawrence, Robert T., MacLean, Brendan X., Villén, Judit, MacCoss, Michael J.
Published in Nature communications (03.12.2018)
Published in Nature communications (03.12.2018)
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Journal Article
Decoding Post-Translational Modification Crosstalk With Proteomics
Leutert, Mario, Entwisle, Samuel W., Villén, Judit
Published in Molecular & cellular proteomics (01.01.2021)
Published in Molecular & cellular proteomics (01.01.2021)
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Journal Article
Thesaurus: quantifying phosphopeptide positional isomers
Searle, Brian C., Lawrence, Robert T., MacCoss, Michael J., Villén, Judit
Published in Nature methods (01.08.2019)
Published in Nature methods (01.08.2019)
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Journal Article
R2‐P2 rapid‐robotic phosphoproteomics enables multidimensional cell signaling studies
Leutert, Mario, Rodríguez‐Mias, Ricard A, Fukuda, Noelle K, Villén, Judit
Published in Molecular systems biology (01.12.2019)
Published in Molecular systems biology (01.12.2019)
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Journal Article
Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation
Swaney, Danielle L, Beltrao, Pedro, Starita, Lea, Guo, Ailan, Rush, John, Fields, Stanley, Krogan, Nevan J, Villén, Judit
Published in Nature methods (01.07.2013)
Published in Nature methods (01.07.2013)
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Journal Article
mRNA Destabilization Is the Dominant Effect of Mammalian MicroRNAs by the Time Substantial Repression Ensues
Eichhorn, Stephen W., Guo, Huili, McGeary, Sean E., Rodriguez-Mias, Ricard A., Shin, Chanseok, Baek, Daehyun, Hsu, Shu-hao, Ghoshal, Kalpana, Villén, Judit, Bartel, David P.
Published in Molecular cell (02.10.2014)
Published in Molecular cell (02.10.2014)
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Journal Article
Automated Enrichment of Phosphotyrosine Peptides for High-Throughput Proteomics
Chang, Alexis, Leutert, Mario, Rodriguez-Mias, Ricard A., Villén, Judit
Published in Journal of proteome research (02.06.2023)
Published in Journal of proteome research (02.06.2023)
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Journal Article
A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression
Huttlin, Edward L., Jedrychowski, Mark P., Elias, Joshua E., Goswami, Tapasree, Rad, Ramin, Beausoleil, Sean A., Villén, Judit, Haas, Wilhelm, Sowa, Mathew E., Gygi, Steven P.
Published in Cell (23.12.2010)
Published in Cell (23.12.2010)
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Journal Article
The impact of microRNAs on protein output
Bartel, David P, Villén, Judit, Shin, Chanseok, Gygi, Steven P, Baek, Daehyun, Camargo, Fernando D
Published in Nature (04.09.2008)
Published in Nature (04.09.2008)
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Journal Article
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
Gygi, Steven P, Villén, Judit, Gerber, Scott A, Beausoleil, Sean A, Rush, John
Published in Nature biotechnology (01.10.2006)
Published in Nature biotechnology (01.10.2006)
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Journal Article
quantitative atlas of mitotic phosphorylation
Dephoure, Noah, Zhou, Chunshui, Villén, Judit, Beausoleil, Sean A, Bakalarski, Corey E, Elledge, Stephen J, Gygi, Steven P
Published in Proceedings of the National Academy of Sciences - PNAS (05.08.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (05.08.2008)
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Journal Article
Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry
Lawrence, Robert T, Searle, Brian C, Llovet, Ariadna, Villén, Judit
Published in Nature methods (01.05.2016)
Published in Nature methods (01.05.2016)
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Journal Article
Large-scale phosphorylation analysis of mouse liver
Villén, Judit, Beausoleil, Sean A, Gerber, Scott A, Gygi, Steven P
Published in Proceedings of the National Academy of Sciences - PNAS (30.01.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (30.01.2007)
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Journal Article
Systematic Functional Prioritization of Protein Posttranslational Modifications
Beltrao, Pedro, Albanèse, Véronique, Kenner, Lillian R., Swaney, Danielle L., Burlingame, Alma, Villén, Judit, Lim, Wendell A., Fraser, James S., Frydman, Judith, Krogan, Nevan J.
Published in Cell (20.07.2012)
Published in Cell (20.07.2012)
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Journal Article
Identification of phosphosites that alter protein thermal stability
Smith, Ian R., Hess, Kyle N., Bakhtina, Anna A., Valente, Anthony S., Rodríguez-Mias, Ricard A., Villén, Judit
Published in Nature methods (01.07.2021)
Published in Nature methods (01.07.2021)
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Journal Article
Coisolation of Peptide Pairs for Peptide Identification and MS/MS-Based Quantification
Smith, Ian R., Eng, Jimmy K., Barente, Anthony S., Hogrebe, Alexander, Llovet, Ariadna, Rodriguez-Mias, Ricard A., Villén, Judit
Published in Analytical chemistry (Washington) (08.11.2022)
Published in Analytical chemistry (Washington) (08.11.2022)
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Journal Article