Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system
Vilchez-Vargas, Ramiro, Geffers, Robert, Suárez-Diez, María, Conte, Ianina, Waliczek, Agnes, Kaser, Vanessa Sabrina, Kralova, Monika, Junca, Howard, Pieper, Dietmar H.
Published in Environmental microbiology (01.04.2013)
Published in Environmental microbiology (01.04.2013)
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Journal Article
Streptococcus mutans Inhibits Candida albicans Hyphal Formation by the Fatty Acid Signaling Molecule trans-2-Decenoic Acid (SDSF)
Vílchez, Ramiro, Lemme, André, Ballhausen, Britta, Thiel, Verena, Schulz, Stefan, Jansen, Rolf, Sztajer, Helena, Wagner-Döbler, Irene
Published in Chembiochem : a European journal of chemical biology (26.07.2010)
Published in Chembiochem : a European journal of chemical biology (26.07.2010)
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Journal Article
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation
Duarte, Márcia, Nielsen, Agnes, Camarinha‐Silva, Amélia, Vilchez‐Vargas, Ramiro, Bruls, Thomas, Wos‐Oxley, Melissa L., Jauregui, Ruy, Pieper, Dietmar H.
Published in Environmental microbiology (01.08.2017)
Published in Environmental microbiology (01.08.2017)
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Journal Article
Analysis of Transcriptionally Active Bacteria Throughout the Gastrointestinal Tract of Healthy Individuals
Vasapolli, Riccardo, Schütte, Kerstin, Schulz, Christian, Vital, Marius, Schomburg, Dirk, Pieper, Dietmar H., Vilchez-Vargas, Ramiro, Malfertheiner, Peter
Published in Gastroenterology (New York, N.Y. 1943) (01.10.2019)
Published in Gastroenterology (New York, N.Y. 1943) (01.10.2019)
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Journal Article
Anti‐TNFα treatment in Crohn’s disease: Impact on hepatic steatosis, gut‐derived hormones and metabolic status
Manka, Paul, Sydor, Svenja, Wase, Nishikant, Best, Jan, Brandenburg, Malte, Hellbeck, Annika, Schänzer, Julia, Vilchez‐Vargas, Ramiro, Link, Alexander, Figge, Anja, Jähnert, Andreas, Arnim, Ulrike, Coombes, Jason D., Cubero, Francisco‐Javier, Kahraman, Alisan, Kim, Moon‐Sung, Kälsch, Julia, Kinner, Sonja, Faber, Klaas‐Nico, Moshage, Han, Gerken, Guido, Syn, Wing‐Kin, Friedman, Scott L., Canbay, Ali, Bechmann, Lars P.
Published in Liver international (01.11.2021)
Published in Liver international (01.11.2021)
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Journal Article
Ursodeoxycholic Acid and Its Taurine- or Glycine-Conjugated Species Reduce Colitogenic Dysbiosis and Equally Suppress Experimental Colitis in Mice
Van den Bossche, Lien, Hindryckx, Pieter, Devisscher, Lindsey, Devriese, Sarah, Van Welden, Sophie, Holvoet, Tom, Vilchez-Vargas, Ramiro, Vital, Marius, Pieper, Dietmar H, Vanden Bussche, Julie, Vanhaecke, Lynn, Van de Wiele, Tom, De Vos, Martine, Laukens, Debby
Published in Applied and environmental microbiology (01.04.2017)
Published in Applied and environmental microbiology (01.04.2017)
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Journal Article
Autoinducer-2-Regulated Genes in Streptococcus mutans UA159 and Global Metabolic Effect of the luxS Mutation
SZTAJER, Helena, LEMME, André, VILCHEZ, Ramiro, SCHULZ, Stefan, GEFFERS, Robert, YIP, Cindy Ying Yin, LEVESQUE, Celine M, CVITKOVITCH, Dennis G, WAGNER-DÖBLER, Irene
Published in Journal of Bacteriology (01.01.2008)
Published in Journal of Bacteriology (01.01.2008)
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Journal Article
Inoculum selection is crucial to ensure operational stability in anaerobic digestion
De Vrieze, Jo, Gildemyn, Sylvia, Vilchez-Vargas, Ramiro, Jáuregui, Ruy, Pieper, Dietmar H., Verstraete, Willy, Boon, Nico
Published in Applied microbiology and biotechnology (01.01.2015)
Published in Applied microbiology and biotechnology (01.01.2015)
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Journal Article
Microbial composition of tumorous and adjacent gastric tissue is associated with prognosis of gastric cancer
Lehr, Konrad, Nikitina, Darja, Vilchez-Vargas, Ramiro, Steponaitiene, Ruta, Thon, Cosima, Skieceviciene, Jurgita, Schanze, Denny, Zenker, Martin, Malfertheiner, Peter, Kupcinskas, Juozas, Link, Alexander
Published in Scientific reports (21.03.2023)
Published in Scientific reports (21.03.2023)
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Journal Article
High-rate activated sludge communities have a distinctly different structure compared to low-rate sludge communities, and are less sensitive towards environmental and operational variables
Meerburg, Francis A., Vlaeminck, Siegfried E., Roume, Hugo, Seuntjens, Dries, Pieper, Dietmar H., Jauregui, Ruy, Vilchez-Vargas, Ramiro, Boon, Nico
Published in Water research (Oxford) (01.09.2016)
Published in Water research (Oxford) (01.09.2016)
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Journal Article
Prediction of anastomotic insufficiency based on the mucosal microbiome prior to colorectal surgery: a proof-of-principle study
Lehr, Konrad, Lange, Undine Gabriele, Hipler, Noam Mathias, Vilchez-Vargas, Ramiro, Hoffmeister, Albrecht, Feisthammel, Jürgen, Buchloh, Dorina, Schanze, Denny, Zenker, Martin, Gockel, Ines, Link, Alexander, Jansen-Winkeln, Boris
Published in Scientific reports (03.07.2024)
Published in Scientific reports (03.07.2024)
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Journal Article
High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis
Szafranski, Szymon P, Wos-Oxley, Melissa L, Vilchez-Vargas, Ramiro, Jáuregui, Ruy, Plumeier, Iris, Klawonn, Frank, Tomasch, Jürgen, Meisinger, Christa, Kühnisch, Jan, Sztajer, Helena, Pieper, Dietmar H, Wagner-Döbler, Irene
Published in Applied and Environmental Microbiology (01.02.2015)
Published in Applied and Environmental Microbiology (01.02.2015)
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Journal Article
Profiling of the Bacterial Microbiota along the Murine Alimentary Tract
Vilchez-Vargas, Ramiro, Salm, Franz, Znalesniak, Eva B, Haupenthal, Katharina, Schanze, Denny, Zenker, Martin, Link, Alexander, Hoffmann, Werner
Published in International journal of molecular sciences (04.02.2022)
Published in International journal of molecular sciences (04.02.2022)
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Journal Article
Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia
Gomes, Newton C.M, Flocco, Cecilia G, Costa, Rodrigo, Junca, Howard, Vilchez, Ramiro, Pieper, Dietmar H, Krögerrecklenfort, Ellen, Paranhos, Rodolfo, Mendonça-Hagler, Leda C.S, Smalla, Kornelia
Published in FEMS microbiology ecology (01.11.2010)
Published in FEMS microbiology ecology (01.11.2010)
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Journal Article
Identification, Quantification, and Determination of the Absolute Configuration of the Bacterial Quorum-Sensing Signal Autoinducer-2 by Gas Chromatography-Mass Spectrometry
Thiel, Verena, Vilchez, Ramiro, Sztajer, Helena, Wagner-Döbler, Irene, Schulz, Stefan
Published in Chembiochem : a European journal of chemical biology (13.02.2009)
Published in Chembiochem : a European journal of chemical biology (13.02.2009)
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Journal Article
Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity
Kerckhof, Frederiek-Maarten, Courtens, Emilie N P, Geirnaert, Annelies, Hoefman, Sven, Ho, Adrian, Vilchez-Vargas, Ramiro, Pieper, Dietmar H, Jauregui, Ruy, Vlaeminck, Siegfried E, Van de Wiele, Tom, Vandamme, Peter, Heylen, Kim, Boon, Nico
Published in PloS one (17.06.2014)
Published in PloS one (17.06.2014)
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Journal Article
A robust nitrifying community in a bioreactor at 50 °C opens up the path for thermophilic nitrogen removal
Courtens, Emilie Np, Spieck, Eva, Vilchez-Vargas, Ramiro, Bodé, Samuel, Boeckx, Pascal, Schouten, Stefan, Jauregui, Ruy, Pieper, Dietmar H, Vlaeminck, Siegfried E, Boon, Nico
Published in The ISME Journal (01.09.2016)
Published in The ISME Journal (01.09.2016)
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Journal Article
Plasma Levels of Omega-3 and Omega-6 Derived Oxylipins Are Associated with Fecal Microbiota Composition in Young Adults
Xu, Huiwen, Jurado-Fasoli, Lucas, Ortiz-Alvarez, Lourdes, Osuna-Prieto, Francisco J, Kohler, Isabelle, Di, Xinyu, Vilchez-Vargas, Ramiro, Link, Alexander, Plaza-Díaz, Julio, Gil, Angel, Rensen, Patrick C N, Ruiz, Jonatan R, Martinez-Tellez, Borja
Published in Nutrients (24.11.2022)
Published in Nutrients (24.11.2022)
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Journal Article