Comparative Analysis of Single-Cell RNA Sequencing Methods
Ziegenhain, Christoph, Vieth, Beate, Parekh, Swati, Reinius, Björn, Guillaumet-Adkins, Amy, Smets, Martha, Leonhardt, Heinrich, Heyn, Holger, Hellmann, Ines, Enard, Wolfgang
Published in Molecular cell (16.02.2017)
Published in Molecular cell (16.02.2017)
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Journal Article
A systematic evaluation of single cell RNA-seq analysis pipelines
Vieth, Beate, Parekh, Swati, Ziegenhain, Christoph, Enard, Wolfgang, Hellmann, Ines
Published in Nature communications (11.10.2019)
Published in Nature communications (11.10.2019)
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Journal Article
powsimR: power analysis for bulk and single cell RNA-seq experiments
Vieth, Beate, Ziegenhain, Christoph, Parekh, Swati, Enard, Wolfgang, Hellmann, Ines
Published in Bioinformatics (Oxford, England) (01.11.2017)
Published in Bioinformatics (Oxford, England) (01.11.2017)
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Journal Article
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq
Bagnoli, Johannes W, Ziegenhain, Christoph, Janjic, Aleksandar, Wange, Lucas E, Vieth, Beate, Parekh, Swati, Geuder, Johanna, Hellmann, Ines, Enard, Wolfgang
Published in Nature communications (26.07.2018)
Published in Nature communications (26.07.2018)
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Journal Article
The effect of background noise and its removal on the analysis of single-cell expression data
Janssen, Philipp, Kliesmete, Zane, Vieth, Beate, Adiconis, Xian, Simmons, Sean, Marshall, Jamie, McCabe, Cristin, Heyn, Holger, Levin, Joshua Z, Enard, Wolfgang, Hellmann, Ines
Published in Genome Biology (19.06.2023)
Published in Genome Biology (19.06.2023)
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Journal Article
Prime-seq, efficient and powerful bulk RNA sequencing
Janjic, Aleksandar, Wange, Lucas E, Bagnoli, Johannes W, Geuder, Johanna, Nguyen, Phong, Richter, Daniel, Vieth, Beate, Vick, Binje, Jeremias, Irmela, Ziegenhain, Christoph, Hellmann, Ines, Enard, Wolfgang
Published in Genome Biology (31.03.2022)
Published in Genome Biology (31.03.2022)
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Journal Article
Regulatory and coding sequences of TRNP1 co-evolve with brain size and cortical folding in mammals
Kliesmete, Zane, Wange, Lucas Esteban, Vieth, Beate, Esgleas, Miriam, Radmer, Jessica, Hülsmann, Matthias, Geuder, Johanna, Richter, Daniel, Ohnuki, Mari, Götz, Magdelena, Hellmann, Ines, Enard, Wolfgang
Published in eLife (22.03.2023)
Published in eLife (22.03.2023)
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Journal Article
Niche WNT5A regulates the actin cytoskeleton during regeneration of hematopoietic stem cells
Schreck, Christina, Istvánffy, Rouzanna, Ziegenhain, Christoph, Sippenauer, Theresa, Ruf, Franziska, Henkel, Lynette, Gärtner, Florian, Vieth, Beate, Florian, M Carolina, Mende, Nicole, Taubenberger, Anna, Prendergast, Áine, Wagner, Alina, Pagel, Charlotta, Grziwok, Sandra, Götze, Katharina S, Guck, Jochen, Dean, Douglas C, Massberg, Steffen, Essers, Marieke, Waskow, Claudia, Geiger, Hartmut, Schiemann, Mathias, Peschel, Christian, Enard, Wolfgang, Oostendorp, Robert A J
Published in The Journal of experimental medicine (01.01.2017)
Published in The Journal of experimental medicine (01.01.2017)
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Journal Article
The impact of amplification on differential expression analyses by RNA-seq
Parekh, Swati, Ziegenhain, Christoph, Vieth, Beate, Enard, Wolfgang, Hellmann, Ines
Published in Scientific reports (09.05.2016)
Published in Scientific reports (09.05.2016)
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Journal Article
zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs
Parekh, Swati, Ziegenhain, Christoph, Vieth, Beate, Enard, Wolfgang, Hellmann, Ines
Published in Gigascience (01.06.2018)
Published in Gigascience (01.06.2018)
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Journal Article
Quantitative single-cell transcriptomics
Ziegenhain, Christoph, Vieth, Beate, Parekh, Swati, Hellmann, Ines, Enard, Wolfgang
Published in Briefings in functional genomics (01.07.2018)
Published in Briefings in functional genomics (01.07.2018)
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Journal Article
A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines
Vieth, Beate, Parekh, Swati, Ziegenhain, Christoph, Enard, Wolfgang, Hellmann, Ines
Published in bioRxiv (22.09.2019)
Published in bioRxiv (22.09.2019)
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Paper
Evidence for compensatory evolution within pleiotropic regulatory elements
Kliesmete, Zane, Orchard, Peter, Lee, Victor Yan Kin, Geuder, Johanna, Krauß, Simon M., Ohnuki, Mari, Jocher, Jessica, Vieth, Beate, Enard, Wolfgang, Hellmann, Ines
Published in Genome research (10.09.2024)
Published in Genome research (10.09.2024)
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Journal Article
Altered social behavior in mice carrying a cortical Foxp2 deletion
Medvedeva, Vera P, Rieger, Michael A, Vieth, Beate, Mombereau, Cédric, Ziegenhain, Christoph, Ghosh, Tanay, Cressant, Arnaud, Enard, Wolfgang, Granon, Sylvie, Dougherty, Joseph D, Groszer, Matthias
Published in Human molecular genetics (01.03.2019)
Published in Human molecular genetics (01.03.2019)
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Journal Article
Primate iPS cells as tools for evolutionary analyses
Wunderlich, Stephanie, Kircher, Martin, Vieth, Beate, Haase, Alexandra, Merkert, Sylvia, Beier, Jennifer, Göhring, Gudrun, Glage, Silke, Schambach, Axel, Curnow, Eliza C., Pääbo, Svante, Martin, Ulrich, Enard, Wolfgang
Published in Stem cell research (01.05.2014)
Published in Stem cell research (01.05.2014)
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Journal Article
The effect of background noise and its removal on the analysis of single-cell expression data
Janssen, Philipp, Kliesmete, Zane, Vieth, Beate, Adiconis, Xian, Simmons, Sean, Marshall, Jamie, Mccabe, Cristin, Heyn, Holger, Levin, Joushua Z, Enard, Wolfgang, Hellmann, Ines
Published in bioRxiv (17.11.2022)
Published in bioRxiv (17.11.2022)
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Paper
Regulatory and coding sequences of TRNP1 co-evolve with brain size and cortical folding in mammals
Kliesmete, Zane, Lucas Esteban Wange, Vieth, Beate, Esgleas, Miriam, Radmer, Jessica, Huelsmann, Matthias, Geuder, Johanna, Richter, Daniel, Ohnuki, Mari, Goetz, Magdalena, Hellmann, Ines, Enard, Wolfgang
Published in bioRxiv (20.09.2022)
Published in bioRxiv (20.09.2022)
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Paper