Review article: how the intestinal microbiota may reflect disease activity and influence therapeutic outcome in inflammatory bowel disease
Caenepeel, Clara, Sadat Seyed Tabib, Nasim, Vieira‐Silva, Sara, Vermeire, Séverine
Published in Alimentary pharmacology & therapeutics (01.11.2020)
Published in Alimentary pharmacology & therapeutics (01.11.2020)
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Journal Article
Microbiology Meets Big Data: The Case of Gut Microbiota-Derived Trimethylamine
Falony, Gwen, Vieira-Silva, Sara, Raes, Jeroen
Published in Annual review of microbiology (15.10.2015)
Published in Annual review of microbiology (15.10.2015)
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Journal Article
Prebiotic inulin-type fructans induce specific changes in the human gut microbiota
Vandeputte, Doris, Falony, Gwen, Vieira-Silva, Sara, Wang, Jun, Sailer, Manuela, Theis, Stephan, Verbeke, Kristin, Raes, Jeroen
Published in Gut (01.11.2017)
Published in Gut (01.11.2017)
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Journal Article
How informative is the mouse for human gut microbiota research?
Nguyen, Thi Loan Anh, Vieira-Silva, Sara, Liston, Adrian, Raes, Jeroen
Published in Disease models & mechanisms (01.01.2015)
Published in Disease models & mechanisms (01.01.2015)
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Journal Article
Quantitative microbiome profiling links gut community variation to microbial load
Vandeputte, Doris, Kathagen, Gunter, D’hoe, Kevin, Vieira-Silva, Sara, Valles-Colomer, Mireia, Sabino, João, Wang, Jun, Tito, Raul Y., De Commer, Lindsey, Darzi, Youssef, Vermeire, Séverine, Falony, Gwen, Raes, Jeroen
Published in Nature (London) (23.11.2017)
Published in Nature (London) (23.11.2017)
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Journal Article
Human gut microbes impact host serum metabolome and insulin sensitivity
Pedersen, Helle Krogh, Gudmundsdottir, Valborg, Nielsen, Henrik Bjørn, Hyotylainen, Tuulia, Nielsen, Trine, Jensen, Benjamin A. H., Forslund, Kristoffer, Hildebrand, Falk, Prifti, Edi, Falony, Gwen, Le Chatelier, Emmanuelle, Levenez, Florence, Doré, Joel, Mattila, Ismo, Plichta, Damian R., Pöhö, Päivi, Hellgren, Lars I., Arumugam, Manimozhiyan, Sunagawa, Shinichi, Vieira-Silva, Sara, Jørgensen, Torben, Holm, Jacob Bak, Trošt, Kajetan, Consortium, MetaHIT, Kristiansen, Karsten, Brix, Susanne, Raes, Jeroen, Wang, Jun, Hansen, Torben, Bork, Peer, Brunak, Søren, Oresic, Matej, Ehrlich, S. Dusko, Pedersen, Oluf
Published in Nature (London) (21.07.2016)
Published in Nature (London) (21.07.2016)
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Journal Article
Population-level analysis of gut microbiome variation
Falony, Gwen, Joossens, Marie, Vieira-Silva, Sara, Wang, Jun, Darzi, Youssef, Faust, Karoline, Kurilshikov, Alexander, Bonder, Marc Jan, Valles-Colomer, Mireia, Vandeputte, Doris, Tito, Raul Y., Chaffron, Samuel, Rymenans, Leen, Verspecht, Chloë, De Sutter, Lise, Lima-Mendez, Gipsi, D'hoe, Kevin, Jonckheere, Karl, Homola, Daniel, Garcia, Roberto, Tigchelaar, Ettje F., Eeckhaudt, Linda, Fu, Jingyuan, Henckaerts, Liesbet, Zhernakova, Alexandra, Wijmenga, Cisca, Raes, Jeroen
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Published in Science (American Association for the Advancement of Science) (29.04.2016)
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Journal Article
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
Zhernakova, Alexandra, Kurilshikov, Alexander, Bonder, Marc Jan, Tigchelaar, Ettje F., Schirmer, Melanie, Vatanen, Tommi, Mujagic, Zlatan, Vila, Arnau Vich, Falony, Gwen, Vieira-Silva, Sara, Wang, Jun, Imhann, Floris, Brandsma, Eelke, Jankipersadsing, Soesma A., Joossens, Marie, Cenit, Maria Carmen, Deelen, Patrick, Swertz, Morris A., study, LifeLines cohort, Weersma, Rinse K., Feskens, Edith J. M., Netea, Mihai G., Gevers, Dirk, Jonkers, Daisy, Franke, Lude, Aulchenko, Yurii S., Huttenhower, Curtis, Raes, Jeroen, Hofker, Marten H., Xavier, Ramnik J., Wijmenga, Cisca, Fu, Jingyuan
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Published in Science (American Association for the Advancement of Science) (29.04.2016)
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Journal Article
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota
Tito, Raul Y, Chaffron, Samuel, Caenepeel, Clara, Lima-Mendez, Gipsi, Wang, Jun, Vieira-Silva, Sara, Falony, Gwen, Hildebrand, Falk, Darzi, Youssef, Rymenans, Leen, Verspecht, Chloë, Bork, Peer, Vermeire, Severine, Joossens, Marie, Raes, Jeroen
Published in Gut (01.07.2019)
Published in Gut (01.07.2019)
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Journal Article
Towards biome-specific analysis of meta-omics data
Darzi, Youssef, Falony, Gwen, Vieira-Silva, Sara, Raes, Jeroen
Published in The ISME Journal (01.05.2016)
Published in The ISME Journal (01.05.2016)
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Journal Article
The neuroactive potential of the human gut microbiota in quality of life and depression
Valles-Colomer, Mireia, Falony, Gwen, Darzi, Youssef, Tigchelaar, Ettje F., Wang, Jun, Tito, Raul Y., Schiweck, Carmen, Kurilshikov, Alexander, Joossens, Marie, Wijmenga, Cisca, Claes, Stephan, Van Oudenhove, Lukas, Zhernakova, Alexandra, Vieira-Silva, Sara, Raes, Jeroen
Published in Nature microbiology (01.04.2019)
Published in Nature microbiology (01.04.2019)
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Journal Article
Novel insights into the genetically obese (ob/ob) and diabetic (db/db) mice: two sides of the same coin
Suriano, Francesco, Vieira-Silva, Sara, Falony, Gwen, Roumain, Martin, Paquot, Adrien, Pelicaen, Rudy, Régnier, Marion, Delzenne, Nathalie M., Raes, Jeroen, Muccioli, Giulio G., Van Hul, Matthias, Cani, Patrice D.
Published in Microbiome (28.06.2021)
Published in Microbiome (28.06.2021)
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Journal Article
Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases
Lloréns-Rico, Verónica, Vieira-Silva, Sara, Gonçalves, Pedro J., Falony, Gwen, Raes, Jeroen
Published in Nature communications (11.06.2021)
Published in Nature communications (11.06.2021)
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Journal Article
Successional Stages in Infant Gut Microbiota Maturation
Beller, Leen, Deboutte, Ward, Falony, Gwen, Vieira-Silva, Sara, Tito, Raul Yhossef, Valles-Colomer, Mireia, Rymenans, Leen, Jansen, Daan, Van Espen, Lore, Papadaki, Maria Ioanna, Shi, Chenyan, Yinda, Claude Kwe, Zeller, Mark, Faust, Karoline, Van Ranst, Marc, Raes, Jeroen, Matthijnssens, Jelle
Published in mBio (21.12.2021)
Published in mBio (21.12.2021)
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Journal Article
Systematic optimization of fermentation conditions for in vitro fermentations with fecal inocula
Poppe, Jonas, Vieira-Silva, Sara, Raes, Jeroen, Verbeke, Kristin, Falony, Gwen
Published in Frontiers in microbiology (24.07.2023)
Published in Frontiers in microbiology (24.07.2023)
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Journal Article
A20 controls intestinal homeostasis through cell-specific activities
Vereecke, Lars, Vieira-Silva, Sara, Billiet, Thomas, van Es, Johan H., Mc Guire, Conor, Slowicka, Karolina, Sze, Mozes, van den Born, Maaike, De Hertogh, Gert, Clevers, Hans, Raes, Jeroen, Rutgeerts, Paul, Vermeire, Severine, Beyaert, Rudi, van Loo, Geert
Published in Nature communications (30.09.2014)
Published in Nature communications (30.09.2014)
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Journal Article
Species–function relationships shape ecological properties of the human gut microbiome
Vieira-Silva, Sara, Falony, Gwen, Darzi, Youssef, Lima-Mendez, Gipsi, Garcia Yunta, Roberto, Okuda, Shujiro, Vandeputte, Doris, Valles-Colomer, Mireia, Hildebrand, Falk, Chaffron, Samuel, Raes, Jeroen
Published in Nature microbiology (13.06.2016)
Published in Nature microbiology (13.06.2016)
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Journal Article
Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults
Kolmeder, Carolin A, Salojärvi, Jarkko, Ritari, Jarmo, de Been, Mark, Raes, Jeroen, Falony, Gwen, Vieira-Silva, Sara, Kekkonen, Riina A, Corthals, Garry L, Palva, Airi, Salonen, Anne, de Vos, Willem M
Published in PloS one (12.04.2016)
Published in PloS one (12.04.2016)
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Journal Article