AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Shahryary, Yadollah, Symeonidi, Aikaterini, Hazarika, Rashmi R., Denkena, Johanna, Mubeen, Talha, Hofmeister, Brigitte, van Gurp, Thomas, Colomé-Tatché, Maria, Verhoeven, Koen J.F., Tuskan, Gerald, Schmitz, Robert J., Johannes, Frank
Published in Genome Biology (06.10.2020)
Published in Genome Biology (06.10.2020)
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Journal Article
Stress-induced DNA methylation changes and their heritability in asexual dandelions
Verhoeven, Koen J. F., Jansen, Jeroen J., van Dijk, Peter J., Biere, Arjen
Published in The New phytologist (01.03.2010)
Published in The New phytologist (01.03.2010)
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Journal Article
epiGBS: reference-free reduced representation bisulfite sequencing
van Gurp, Thomas P, Wagemaker, Niels C A M, Wouters, Björn, Vergeer, Philippine, Ouborg, Joop N J, Verhoeven, Koen J F
Published in Nature methods (01.04.2016)
Published in Nature methods (01.04.2016)
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Journal Article
Evidence from pyrosequencing indicates that natural variation in animal personality is associated with DRD4 DNA methylation
Verhulst, Eveline C., Mateman, A. Christa, Zwier, Mathijs V., Caro, Samuel P., Verhoeven, Koen J.F., van Oers, Kees
Published in Molecular ecology (01.04.2016)
Published in Molecular ecology (01.04.2016)
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Understanding natural epigenetic variation
Richards, Christina L., Bossdorf, Oliver, Verhoeven, Koen J. F.
Published in The New phytologist (01.08.2010)
Published in The New phytologist (01.08.2010)
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Journal Article
Gene and transposable element methylation in great tit (Parus major) brain and blood
Derks, Martijn F L, Schachtschneider, Kyle M, Madsen, Ole, Schijlen, Elio, Verhoeven, Koen J F, van Oers, Kees
Published in BMC genomics (04.05.2016)
Published in BMC genomics (04.05.2016)
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Journal Article
Successful range-expanding plants experience less above-ground and below-ground enemy impact
van der Putten, Wim H, Engelkes, Tim, Morriën, Elly, Verhoeven, Koen J. F, Bezemer, T. Martijn, Biere, Arjen, Harvey, Jeffrey A, McIntyre, Lauren M, Tamis, Wil L. M
Published in Nature (18.12.2008)
Published in Nature (18.12.2008)
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Journal Article
Effects of Multi-Generational Stress Exposure and Offspring Environment on the Expression and Persistence of Transgenerational Effects in Arabidopsis thaliana
Groot, Maartje P, Kooke, Rik, Knoben, Nieke, Vergeer, Philippine, Keurentjes, Joost J B, Ouborg, N Joop, Verhoeven, Koen J F
Published in PloS one (16.03.2016)
Published in PloS one (16.03.2016)
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Plant invaders and their novel natural enemies: who is naïve?
Verhoeven, Koen J.F, Biere, Arjen, Harvey, Jeffrey A, van der Putten, Wim H
Published in Ecology letters (01.02.2009)
Published in Ecology letters (01.02.2009)
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Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants
Ferreira de Carvalho, Julie, Oplaat, Carla, Pappas, Nikolaos, Derks, Martijn, de Ridder, Dick, Verhoeven, Koen J F
Published in BMC genomics (08.03.2016)
Published in BMC genomics (08.03.2016)
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Journal Article
Increased transgenerational epigenetic variation, but not predictable epigenetic variants, after environmental exposure in two apomictic dandelion lineages
Preite, Veronica, Oplaat, Carla, Biere, Arjen, Kirschner, Jan, van der Putten, Wim H., Verhoeven, Koen J. F.
Published in Ecology and evolution (01.03.2018)
Published in Ecology and evolution (01.03.2018)
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