Deciphering microbial interactions in synthetic human gut microbiome communities
Venturelli, Ophelia S, Carr, Alex V, Fisher, Garth, Hsu, Ryan H, Lau, Rebecca, Bowen, Benjamin P, Hromada, Susan, Northen, Trent, Arkin, Adam P
Published in Molecular systems biology (01.06.2018)
Published in Molecular systems biology (01.06.2018)
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Journal Article
Population diversification in a yeast metabolic program promotes anticipation of environmental shifts
Venturelli, Ophelia S, Zuleta, Ignacio, Murray, Richard M, El-Samad, Hana
Published in PLoS biology (01.01.2015)
Published in PLoS biology (01.01.2015)
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Journal Article
Surviving COVID-19 in Bergamo province: a post-acute outpatient re-evaluation
Venturelli, Serena, Benatti, Simone Vasilij, Casati, Monica, Binda, Francesca, Zuglian, Gianluca, Imeri, Gianluca, Conti, Caterina, Biffi, Ave Maria, Spada, Maria Simonetta, Bondi, Emi, Camera, Giorgia, Severgnini, Roberta, Giammarresi, Andrea, Marinaro, Claudia, Rossini, Alessandro, Bonaffini, Pietro Andrea, Guerra, Giovanni, Bellasi, Antonio, Cesa, Simonetta, Rizzi, Marco
Published in Epidemiology & Infection (19.01.2021)
Published in Epidemiology & Infection (19.01.2021)
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Journal Article
Negative interactions determine Clostridioides difficile growth in synthetic human gut communities
Hromada, Susan, Qian, Yili, Jacobson, Tyler B, Clark, Ryan L, Watson, Lauren, Safdar, Nasia, Amador‐Noguez, Daniel, Venturelli, Ophelia S
Published in Molecular systems biology (01.10.2021)
Published in Molecular systems biology (01.10.2021)
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Journal Article
Scalable nonlinear programming framework for parameter estimation in dynamic biological system models
Shin, Sungho, Venturelli, Ophelia S, Zavala, Victor M
Published in PLoS computational biology (25.03.2019)
Published in PLoS computational biology (25.03.2019)
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Journal Article
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes
Sulaiman, Jordy Evan, Thompson, Jaron, Qian, Yili, Vivas, Eugenio I., Diener, Christian, Gibbons, Sean M., Safdar, Nasia, Venturelli, Ophelia S.
Published in Nature communications (28.08.2024)
Published in Nature communications (28.08.2024)
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Journal Article
Programming bacteria for multiplexed DNA detection
Cheng, Yu-Yu, Chen, Zhengyi, Cao, Xinyun, Ross, Tyler D., Falbel, Tanya G., Burton, Briana M., Venturelli, Ophelia S.
Published in Nature communications (10.04.2023)
Published in Nature communications (10.04.2023)
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Journal Article
Efficient plasmid transfer via natural competence in a microbial co‐culture
Cheng, Yu‐Yu, Zhou, Zhichao, Papadopoulos, James M, Zuke, Jason D, Falbel, Tanya G, Anantharaman, Karthik, Burton, Briana M, Venturelli, Ophelia S
Published in Molecular systems biology (09.03.2023)
Published in Molecular systems biology (09.03.2023)
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Journal Article
Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics
Baranwal, Mayank, Clark, Ryan L, Thompson, Jaron, Sun, Zeyu, Hero, Alfred O, Venturelli, Ophelia S
Published in eLife (23.06.2022)
Published in eLife (23.06.2022)
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Journal Article
Programming mRNA decay to modulate synthetic circuit resource allocation
Venturelli, Ophelia S., Tei, Mika, Bauer, Stefan, Chan, Leanne Jade G., Petzold, Christopher J., Arkin, Adam P
Published in Nature communications (26.04.2017)
Published in Nature communications (26.04.2017)
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Journal Article
Microbial Interaction Network Inference in Microfluidic Droplets
Hsu, Ryan H., Clark, Ryan L., Tan, Jin Wen, Ahn, John C., Gupta, Sonali, Romero, Philip A., Venturelli, Ophelia S.
Published in Cell systems (25.09.2019)
Published in Cell systems (25.09.2019)
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Journal Article
The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor
Renault, V M, Thekkat, P U, Hoang, K L, White, J L, Brady, C A, Kenzelmann Broz, D, Venturelli, O S, Johnson, T M, Oskoui, P R, Xuan, Z, Santo, E E, Zhang, M Q, Vogel, H, Attardi, L D, Brunet, A
Published in Oncogene (21.07.2011)
Published in Oncogene (21.07.2011)
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Journal Article
Clinical variables associated with late-onset thrombotic and cardiovascular events, after SARS-CoV-2 infection, in a cohort of patients from the first epidemic wave: an 18-month analysis on the "Surviving-COVID" cohort from Bergamo, Italy
Benatti, S V, Venturelli, S, Crotti, G, Ghirardi, A, Binda, F, Savardi, M, Previtali, G, Seghezzi, M, Marozzi, R, Corsi, A, Bonaffini, P A, Gori, M, Falanga, A, Signoroni, A, Alessio, M G, Zucchi, A, Barbui, T, Rizzi, M
Published in Frontiers in cardiovascular medicine (30.11.2023)
Published in Frontiers in cardiovascular medicine (30.11.2023)
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