Adversarial attacks and adversarial robustness in computational pathology
Ghaffari Laleh, Narmin, Truhn, Daniel, Veldhuizen, Gregory Patrick, Han, Tianyu, van Treeck, Marko, Buelow, Roman D, Langer, Rupert, Dislich, Bastian, Boor, Peter, Schulz, Volkmar, Kather, Jakob Nikolas
Published in Nature communications (29.09.2022)
Published in Nature communications (29.09.2022)
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Self-supervised attention-based deep learning for pan-cancer mutation prediction from histopathology
Saldanha, Oliver Lester, Loeffler, Chiara M L, Niehues, Jan Moritz, van Treeck, Marko, Seraphin, Tobias P, Hewitt, Katherine Jane, Cifci, Didem, Veldhuizen, Gregory Patrick, Ramesh, Siddhi, Pearson, Alexander T, Kather, Jakob Nikolas
Published in NPJ precision oncology (28.03.2023)
Published in NPJ precision oncology (28.03.2023)
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Direct prediction of genetic aberrations from pathology images in gastric cancer with swarm learning
Saldanha, Oliver Lester, Muti, Hannah Sophie, Grabsch, Heike I., Langer, Rupert, Dislich, Bastian, Kohlruss, Meike, Keller, Gisela, van Treeck, Marko, Hewitt, Katherine Jane, Kolbinger, Fiona R., Veldhuizen, Gregory Patrick, Boor, Peter, Foersch, Sebastian, Truhn, Daniel, Kather, Jakob Nikolas
Published in Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association (01.03.2023)
Published in Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association (01.03.2023)
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Deep learning-based subtyping of gastric cancer histology predicts clinical outcome: a multi-institutional retrospective study
Veldhuizen, Gregory Patrick, Röcken, Christoph, Behrens, Hans-Michael, Cifci, Didem, Muti, Hannah Sophie, Yoshikawa, Takaki, Arai, Tomio, Oshima, Takashi, Tan, Patrick, Ebert, Matthias P., Pearson, Alexander T., Calderaro, Julien, Grabsch, Heike I., Kather, Jakob Nikolas
Published in Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association (01.09.2023)
Published in Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association (01.09.2023)
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Prediction models for hormone receptor status in female breast cancer do not extend to males: further evidence of sex-based disparity in breast cancer
Chatterji, Subarnarekha, Niehues, Jan Moritz, van Treeck, Marko, Loeffler, Chiara Maria Lavinia, Saldanha, Oliver Lester, Veldhuizen, Gregory Patrick, Cifci, Didem, Carrero, Zunamys Itzell, Abu-Eid, Rasha, Speirs, Valerie, Kather, Jakob Nikolas
Published in NPJ breast cancer (08.11.2023)
Published in NPJ breast cancer (08.11.2023)
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Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study
Wagner, Sophia J., Reisenbüchler, Daniel, West, Nicholas P., Niehues, Jan Moritz, Zhu, Jiefu, Foersch, Sebastian, Veldhuizen, Gregory Patrick, Quirke, Philip, Grabsch, Heike I., van den Brandt, Piet A., Hutchins, Gordon G.A., Richman, Susan D., Yuan, Tanwei, Langer, Rupert, Jenniskens, Josien C.A., Offermans, Kelly, Mueller, Wolfram, Gray, Richard, Gruber, Stephen B., Greenson, Joel K., Rennert, Gad, Bonner, Joseph D., Schmolze, Daniel, Jonnagaddala, Jitendra, Hawkins, Nicholas J., Ward, Robyn L., Morton, Dion, Seymour, Matthew, Magill, Laura, Nowak, Marta, Hay, Jennifer, Koelzer, Viktor H., Church, David N., Church, David, Domingo, Enric, Edwards, Joanne, Glimelius, Bengt, Gogenur, Ismail, Harkin, Andrea, Hay, Jen, Iveson, Timothy, Jaeger, Emma, Kelly, Caroline, Kerr, Rachel, Maka, Noori, Morgan, Hannah, Oien, Karin, Orange, Clare, Palles, Claire, Roxburgh, Campbell, Sansom, Owen, Saunders, Mark, Tomlinson, Ian, Matek, Christian, Geppert, Carol, Peng, Chaolong, Zhi, Cheng, Ouyang, Xiaoming, James, Jacqueline A., Loughrey, Maurice B., Salto-Tellez, Manuel, Brenner, Hermann, Hoffmeister, Michael, Truhn, Daniel, Schnabel, Julia A., Boxberg, Melanie, Peng, Tingying, Kather, Jakob Nikolas
Published in Cancer cell (11.09.2023)
Published in Cancer cell (11.09.2023)
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Journal Article
Fully transformer-based biomarker prediction from colorectal cancer histology: a large-scale multicentric study
Wagner, Sophia J, Reisenbüchler, Daniel, West, Nicholas P, Jan Moritz Niehues, Veldhuizen, Gregory Patrick, Quirke, Philip, Grabsch, Heike I, Piet A van den Brandt, Hutchins, Gordon G A, Richman, Susan D, Yuan, Tanwei, Langer, Rupert, Josien Christina Anna Jenniskens, Kelly Offermans, Mueller, Wolfram, Gray, Richard, Gruber, Stephen B, Greenson, Joel K, Rennert, Gad, Bonner, Joseph D, Schmolze, Daniel, James, Jacqueline A, Loughrey, Maurice B, Salto-Tellez, Manuel, Brenner, Hermann, Hoffmeister, Michael, Truhn, Daniel, Schnabel, Julia A, Boxberg, Melanie, Peng, Tingying, Kather, Jakob Nikolas
Published in arXiv.org (01.03.2023)
Published in arXiv.org (01.03.2023)
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Journal Article
Adversarial attacks and adversarial robustness in computational pathology
Narmin Ghaffari Laleh, Truhn, Daniel, Veldhuizen, Gregory Patrick, Han, Tianyu, Marko Van Treeck, Buelow, Roman D, Langer, Rupert, Dislich, Bastian, Boor, Peter, Schulz, Volkmar, Kather, Jakob Nikolas
Published in bioRxiv (18.03.2022)
Published in bioRxiv (18.03.2022)
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Paper
Self-supervised deep learning for pan-cancer mutation prediction from histopathology
Oliver Lester Saldanha, Loeffler, Chiara Ml, Jan Moritz Niehues, Marko Van Treeck, Seraphin, Tobias Paul, Hewitt, Katherine Jane, Cifci, Didem, Veldhuizen, Gregory Patrick, Ramesh, Siddhi, Pearson, Alexander T, Kather, Jakob Nikolas
Published in bioRxiv (16.09.2022)
Published in bioRxiv (16.09.2022)
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