Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins
Varadi, Mihaly, Zsolyomi, Fruzsina, Guharoy, Mainak, Tompa, Peter
Published in PloS one (06.10.2015)
Published in PloS one (06.10.2015)
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Journal Article
PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data
Nair, Sreenath, Váradi, Mihály, Nadzirin, Nurul, Pravda, Lukáš, Anyango, Stephen, Mir, Saqib, Berrisford, John, Armstrong, David, Gutmanas, Aleksandras, Velankar, Sameer
Published in Bioinformatics (Oxford, England) (05.11.2021)
Published in Bioinformatics (Oxford, England) (05.11.2021)
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Journal Article
Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology
Tordai, Hedvig, Suhajda, Erzsebet, Sillitoe, Ian, Nair, Sreenath, Varadi, Mihaly, Hegedus, Tamas
Published in International journal of molecular sciences (09.08.2022)
Published in International journal of molecular sciences (09.08.2022)
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Journal Article
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins
Varadi, Mihaly, Kosol, Simone, Lebrun, Pierre, Valentini, Erica, Blackledge, Martin, Dunker, A Keith, Felli, Isabella C, Forman-Kay, Julie D, Kriwacki, Richard W, Pierattelli, Roberta, Sussman, Joel, Svergun, Dmitri I, Uversky, Vladimir N, Vendruscolo, Michele, Wishart, David, Wright, Peter E, Tompa, Peter
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies
Waman, Vaishali P, Sen, Neeladri, Varadi, Mihaly, Daina, Antoine, Wodak, Shoshana J, Zoete, Vincent, Velankar, Sameer, Orengo, Christine
Published in Briefings in Bioinformatics (22.03.2021)
Published in Briefings in Bioinformatics (22.03.2021)
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Journal Article
Book Review
PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education
Varadi, Mihaly, Anyango, Stephen, Appasamy, Sri Devan, Armstrong, David, Bage, Marcus, Berrisford, John, Choudhary, Preeti, Bertoni, Damian, Deshpande, Mandar, Leines, Grisell Diaz, Ellaway, Joseph, Evans, Genevieve, Gaborova, Romana, Gupta, Deepti, Gutmanas, Aleksandras, Harrus, Deborah, Kleywegt, Gerard J., Bueno, Weslley Morellato, Nadzirin, Nurul, Nair, Sreenath, Pravda, Lukas, Afonso, Marcelo Querino Lima, Sehnal, David, Tanweer, Ahsan, Tolchard, James, Abrams, Charlotte, Dunlop, Roisin, Velankar, Sameer
Published in Protein science (01.10.2022)
Published in Protein science (01.10.2022)
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Journal Article
PDBeCIF: an open-source mmCIF/CIF parsing and processing package
van Ginkel, Glen, Pravda, LukáÅ, Dana, José M, Varadi, Mihaly, Keller, Peter, Anyango, Stephen, Velankar, Sameer
Published in BMC bioinformatics (23.07.2021)
Published in BMC bioinformatics (23.07.2021)
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Journal Article
Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies
Ellaway, Joseph I. J., Anyango, Stephen, Nair, Sreenath, Zaki, Hossam A., Nadzirin, Nurul, Powell, Harold R., Gutmanas, Aleksandras, Varadi, Mihaly, Velankar, Sameer
Published in Structural dynamics (Melville, N.Y.) (01.05.2024)
Published in Structural dynamics (Melville, N.Y.) (01.05.2024)
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Journal Article
Interaction between the scaffold proteins CBP by IQGAP1 provides an interface between gene expression and cytoskeletal activity
Kosol, Simone, Contreras-Martos, Sara, Piai, Alessandro, Varadi, Mihaly, Lazar, Tamas, Bekesi, Angela, Lebrun, Pierre, Felli, Isabella C., Pierattelli, Roberta, Tompa, Peter
Published in Scientific reports (01.04.2020)
Published in Scientific reports (01.04.2020)
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Journal Article
Linking functions: an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP
Contreras-Martos, Sara, Piai, Alessandro, Kosol, Simone, Varadi, Mihaly, Bekesi, Angela, Lebrun, Pierre, Volkov, Alexander N., Gevaert, Kris, Pierattelli, Roberta, Felli, Isabella C., Tompa, Peter
Published in Scientific reports (05.07.2017)
Published in Scientific reports (05.07.2017)
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Journal Article
PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank
Kunnakkattu, Ibrahim Roshan, Choudhary, Preeti, Pravda, Lukas, Nadzirin, Nurul, Smart, Oliver S., Yuan, Qi, Anyango, Stephen, Nair, Sreenath, Varadi, Mihaly, Velankar, Sameer
Published in Journal of cheminformatics (02.12.2023)
Published in Journal of cheminformatics (02.12.2023)
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Journal Article
Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data
Appasamy, Sri Devan, Berrisford, John, Gaborova, Romana, Nair, Sreenath, Anyango, Stephen, Grudinin, Sergei, Deshpande, Mandar, Armstrong, David, Pidruchna, Ivanna, Ellaway, Joseph I. J., Leines, Grisell Díaz, Gupta, Deepti, Harrus, Deborah, Varadi, Mihaly, Velankar, Sameer
Published in Scientific data (01.12.2023)
Published in Scientific data (01.12.2023)
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Journal Article
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
Mir, Saqib, Alhroub, Younes, Anyango, Stephen, Armstrong, David R, Berrisford, John M, Clark, Alice R, Conroy, Matthew J, Dana, Jose M, Deshpande, Mandar, Gupta, Deepti, Gutmanas, Aleksandras, Haslam, Pauline, Mak, Lora, Mukhopadhyay, Abhik, Nadzirin, Nurul, Paysan-Lafosse, Typhaine, Sehnal, David, Sen, Sanchayita, Smart, Oliver S, Varadi, Mihaly, Kleywegt, Gerard J, Velankar, Sameer
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Computational approaches for inferring the functions of intrinsically disordered proteins
Varadi, Mihaly, Vranken, Wim, Guharoy, Mainak, Tompa, Peter
Published in Frontiers in molecular biosciences (05.08.2015)
Published in Frontiers in molecular biosciences (05.08.2015)
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Journal Article
The Protein Ensemble Database
Varadi, Mihaly, Tompa, Peter
Published in Advances in experimental medicine and biology (01.01.2015)
Published in Advances in experimental medicine and biology (01.01.2015)
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Journal Article