Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
Hug, Clemens B., Grimaldi, Alexis G., Kruse, Kai, Vaquerizas, Juan M.
Published in Cell (06.04.2017)
Published in Cell (06.04.2017)
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Journal Article
DNA-Binding Specificities of Human Transcription Factors
Jolma, Arttu, Yan, Jian, Whitington, Thomas, Toivonen, Jarkko, Nitta, Kazuhiro R., Rastas, Pasi, Morgunova, Ekaterina, Enge, Martin, Taipale, Mikko, Wei, Gonghong, Palin, Kimmo, Vaquerizas, Juan M., Vincentelli, Renaud, Luscombe, Nicholas M., Hughes, Timothy R., Lemaire, Patrick, Ukkonen, Esko, Kivioja, Teemu, Taipale, Jussi
Published in Cell (2013)
Published in Cell (2013)
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Journal Article
Cell–matrix signals specify bone endothelial cells during developmental osteogenesis
Langen, Urs H., Pitulescu, Mara E., Kim, Jung Mo, Enriquez-Gasca, Rocio, Sivaraj, Kishor K., Kusumbe, Anjali P., Singh, Amit, Di Russo, Jacopo, Bixel, M. Gabriele, Zhou, Bin, Sorokin, Lydia, Vaquerizas, Juan M., Adams, Ralf H.
Published in Nature cell biology (01.03.2017)
Published in Nature cell biology (01.03.2017)
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Journal Article
A census of human transcription factors: function, expression and evolution
Vaquerizas, Juan M, Luscombe, Nicholas M, Kummerfeld, Sarah K, Teichmann, Sarah A
Published in Nature reviews. Genetics (01.04.2009)
Published in Nature reviews. Genetics (01.04.2009)
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Journal Article
Chromatin conformation analysis of primary patient tissue using a low input Hi-C method
Díaz, Noelia, Kruse, Kai, Erdmann, Tabea, Staiger, Annette M., Ott, German, Lenz, Georg, Vaquerizas, Juan M.
Published in Nature communications (29.11.2018)
Published in Nature communications (29.11.2018)
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Journal Article
Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly
Ishiuchi, Takashi, Enriquez-Gasca, Rocio, Mizutani, Eiji, Bošković, Ana, Ziegler-Birling, Celine, Rodriguez-Terrones, Diego, Wakayama, Teruhiko, Vaquerizas, Juan M, Torres-Padilla, Maria-Elena
Published in Nature structural & molecular biology (01.09.2015)
Published in Nature structural & molecular biology (01.09.2015)
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Journal Article
A molecular roadmap for the emergence of early-embryonic-like cells in culture
Rodriguez-Terrones, Diego, Gaume, Xavier, Ishiuchi, Takashi, Weiss, Amélie, Kopp, Arnaud, Kruse, Kai, Penning, Audrey, Vaquerizas, Juan M., Brino, Laurent, Torres-Padilla, Maria-Elena
Published in Nature genetics (01.01.2018)
Published in Nature genetics (01.01.2018)
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Journal Article
Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3
Burton, Adam, Brochard, Vincent, Galan, Carmen, Ruiz-Morales, Elias R., Rovira, Quirze, Rodriguez-Terrones, Diego, Kruse, Kai, Le Gras, Stéphanie, Udayakumar, Vishnu S., Chin, Hang Gyeong, Eid, André, Liu, Xiaoyu, Wang, Chenfei, Gao, Shaorong, Pradhan, Sriharsa, Vaquerizas, Juan M., Beaujean, Nathalie, Jenuwein, Thomas, Torres-Padilla, Maria-Elena
Published in Nature cell biology (01.07.2020)
Published in Nature cell biology (01.07.2020)
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Journal Article
Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
Rhodes, James D.P., Feldmann, Angelika, Hernández-Rodríguez, Benjamín, Díaz, Noelia, Brown, Jill M., Fursova, Nadezda A., Blackledge, Neil P., Prathapan, Praveen, Dobrinic, Paula, Huseyin, Miles K., Szczurek, Aleksander, Kruse, Kai, Nasmyth, Kim A., Buckle, Veronica J., Vaquerizas, Juan M., Klose, Robert J.
Published in Cell reports (Cambridge) (21.01.2020)
Published in Cell reports (Cambridge) (21.01.2020)
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Journal Article
Chromatin architecture transitions from zebrafish sperm through early embryogenesis
Wike, Candice L, Guo, Yixuan, Tan, Mengyao, Nakamura, Ryohei, Shaw, Dana Klatt, Díaz, Noelia, Whittaker-Tademy, Aneasha F, Durand, Neva C, Aiden, Erez Lieberman, Vaquerizas, Juan M, Grunwald, David, Takeda, Hiroyuki, Cairns, Bradley R
Published in Genome research (01.06.2021)
Published in Genome research (01.06.2021)
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Journal Article
The Transition from Quiescent to Activated States in Human Hematopoietic Stem Cells Is Governed by Dynamic 3D Genome Reorganization
Takayama, Naoya, Murison, Alex, Takayanagi, Shin-ichiro, Arlidge, Christopher, Zhou, Stanley, Garcia-Prat, Laura, Chan-Seng-Yue, Michelle, Zandi, Sasan, Gan, Olga I., Boutzen, Héléna, Kaufmann, Kerstin B., Trotman-Grant, Aaron, Schoof, Erwin, Kron, Ken, Díaz, Noelia, Lee, John J.Y., Medina, Tiago, De Carvalho, Daniel D., Taylor, Michael D., Vaquerizas, Juan M., Xie, Stephanie Z., Dick, John E., Lupien, Mathieu
Published in Cell stem cell (04.03.2021)
Published in Cell stem cell (04.03.2021)
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Journal Article
TADtool: visual parameter identification for TAD-calling algorithms
Kruse, Kai, Hug, Clemens B, Hernández-Rodríguez, Benjamín, Vaquerizas, Juan M
Published in Bioinformatics (Oxford, England) (15.10.2016)
Published in Bioinformatics (Oxford, England) (15.10.2016)
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Journal Article
Transcriptional regulation of endothelial cell behavior during sprouting angiogenesis
Jeong, Hyun-Woo, Hernández-Rodríguez, Benjamín, Kim, JungMo, Kim, Kee-Pyo, Enriquez-Gasca, Rocio, Yoon, Juyong, Adams, Susanne, Schöler, Hans R., Vaquerizas, Juan M., Adams, Ralf H.
Published in Nature communications (28.09.2017)
Published in Nature communications (28.09.2017)
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Journal Article
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
Jolma, Arttu, Kivioja, Teemu, Toivonen, Jarkko, Cheng, Lu, Wei, Gonghong, Enge, Martin, Taipale, Mikko, Vaquerizas, Juan M, Yan, Jian, Sillanpää, Mikko J, Bonke, Martin, Palin, Kimmo, Talukder, Shaheynoor, Hughes, Timothy R, Luscombe, Nicholas M, Ukkonen, Esko, Taipale, Jussi
Published in Genome research (01.06.2010)
Published in Genome research (01.06.2010)
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Journal Article
Epigenetic alterations affecting hematopoietic regulatory networks as drivers of mixed myeloid/lymphoid leukemia
Mulet-Lazaro, Roger, van Herk, Stanley, Nuetzel, Margit, Sijs-Szabo, Aniko, Díaz, Noelia, Kelly, Katherine, Erpelinck-Verschueren, Claudia, Schwarzfischer-Pfeilschifter, Lucia, Stanewsky, Hanna, Ackermann, Ute, Glatz, Dagmar, Raithel, Johanna, Fischer, Alexander, Pohl, Sandra, Rijneveld, Anita, Vaquerizas, Juan M., Thiede, Christian, Plass, Christoph, Wouters, Bas J., Delwel, Ruud, Rehli, Michael, Gebhard, Claudia
Published in Nature communications (07.07.2024)
Published in Nature communications (07.07.2024)
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Journal Article
Lima1 mediates the pluripotency control of membrane dynamics and cellular metabolism
Duethorn, Binyamin, Groll, Fabian, Rieger, Bettina, Drexler, Hannes C. A., Brinkmann, Heike, Kremer, Ludmila, Stehling, Martin, Borowski, Marie-Theres, Mildner, Karina, Zeuschner, Dagmar, Zernicka-Goetz, Magdalena, Stemmler, Marc P., Busch, Karin B., Vaquerizas, Juan M., Bedzhov, Ivan
Published in Nature communications (01.02.2022)
Published in Nature communications (01.02.2022)
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