Molecular simulations reveal chemomechanical forces driving bacterial gliding motility
Miratsky, Jacob, Trivedi, Abhishek, Vant, John W., Shrivastava, Abhishek, Singharoy, Abhishek
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Journal Article
Molecular mechanism of glycolytic assembly on mitochondria through O-GlcNAcylation
Vant, John W., Wang, Haoming, Pekkurnaz, Gulcin, Singharoy, Abhishek
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Journal Article
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism
Singharoy, Abhishek, Maffeo, Christopher, Delgado-Magnero, Karelia H., Swainsbury, David J.K., Sener, Melih, Kleinekathöfer, Ulrich, Vant, John W., Nguyen, Jonathan, Hitchcock, Andrew, Isralewitz, Barry, Teo, Ivan, Chandler, Danielle E., Stone, John E., Phillips, James C., Pogorelov, Taras V., Mallus, M. Ilaria, Chipot, Christophe, Luthey-Schulten, Zaida, Tieleman, D. Peter, Hunter, C. Neil, Tajkhorshid, Emad, Aksimentiev, Aleksei, Schulten, Klaus
Published in Cell (14.11.2019)
Published in Cell (14.11.2019)
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Journal Article
Adaptive Ensemble Refinement of Protein Structures in High Resolution Electron Microscopy Density Maps with Radical Augmented Molecular Dynamics Flexible Fitting
Sarkar, Daipayan, Lee, Hyungro, Vant, John W., Turilli, Matteo, Vermaas, Josh V., Jha, Shantenu, Singharoy, Abhishek
Published in Journal of chemical information and modeling (25.09.2023)
Published in Journal of chemical information and modeling (25.09.2023)
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Journal Article
Exploring cryo-electron microscopy with molecular dynamics
Vant, John W, Sarkar, Daipayan, Nguyen, Jonathan, Baker, Alexander T, Vermaas, Josh V, Singharoy, Abhishek
Published in Biochemical Society transactions (28.02.2022)
Published in Biochemical Society transactions (28.02.2022)
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Journal Article
Flexible Fitting of Small Molecules into Electron Microscopy Maps Using Molecular Dynamics Simulations with Neural Network Potentials
Vant, John W, Lahey, Shae-Lynn J, Jana, Kalyanashis, Shekhar, Mrinal, Sarkar, Daipayan, Munk, Barbara H, Kleinekathöfer, Ulrich, Mittal, Sumit, Rowley, Christopher, Singharoy, Abhishek
Published in Journal of chemical information and modeling (26.05.2020)
Published in Journal of chemical information and modeling (26.05.2020)
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Journal Article
Cladosporium fulvum Virulence Protein Avr2 Inhibits Host Proteases Required for Basal Defense
Esse, H. Peter van, Klooster, John W. van't, Bolton, Melvin D, Yadeta, Koste A, Baarlen, Peter van, Boeren, Sjef, Vervoort, Jacques, Wit, Pierre J.G.M. de, Thomma, Bart P.H.J
Published in The Plant cell (01.07.2008)
Published in The Plant cell (01.07.2008)
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Journal Article
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism
Singharoy, Abhishek, Maffeo, Christopher, Delgado-Magnero, Karelia H., Swainsbury, David J. K., Sener, Melih, Kleinekathöfer, Ulrich, Vant, John W., Nguyen, Jonathan, Hitchcock, Andrew, Isralewitz, Barry, Teo, Ivan, Chandler, Danielle E., Stone, John E., Phillips, James C., Pogorelov, Taras V., Mallus, M. Ilaria, Chipot, Christophe, Luthey-Schulten, Zaida, Tieleman, D. Peter, Hunter, C. Neil, Tajkhorshid, Emad, Aksimentiev, Aleksei, Schulten, Klaus
Published in Cell (01.11.2019)
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Published in Cell (01.11.2019)
Journal Article
Cladosporium Avr2 Inhibits Tomato Rcr3 Protease Required for Cf-2-Dependent Disease Resistance
Rooney, Henrietta C. E, van't Klooster, John W, van der Hoorn, Renier A. L, Joosten, Matthieu H. A. J, Jones, Jonathan D. G, de Wit, Pierre J. G. M
Published in Science (American Association for the Advancement of Science) (17.06.2005)
Published in Science (American Association for the Advancement of Science) (17.06.2005)
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Journal Article
Dual disease resistance mediated by the immune receptor Cf-2 in tomato requires a common virulence target of a fungus and a nematode
Lozano-Torres, Jose L, Wilbers, Ruud H. P, Gawronski, Piotr, Boshoven, Jordi C, Finkers-Tomczak, Anna, Cordewener, Jan H. G, America, Antoine H. P, Overmars, Hein A, Van ‘t Klooster, John W, Baranowski, Lukasz, Sobczak, Miroslaw, Ilyas, Muhammad, van der Hoorn, Renier A. L, Schots, Arjen, de Wit, Pierre J. G. M, Bakker, Jaap, Goverse, Aska, Smant, Geert
Published in Proceedings of the National Academy of Sciences - PNAS (19.06.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (19.06.2012)
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Journal Article
Internuclear Gene Silencing in Phytophthora infestans
van West, Pieter, Kamoun, Sophien, van ’t Klooster, John W, Govers, Francine
Published in Molecular cell (01.03.1999)
Published in Molecular cell (01.03.1999)
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Journal Article
Mapping of Avirulence Genes in Phytophthora infestans With Amplified Fragment Length Polymorphism Markers Selected by Bulked Segregant Analysis
van der Lee, Theo, Robold, Andrea, Testa, Antonino, van `t Klooster, John W, Govers, Francine
Published in Genetics (Austin) (01.03.2001)
Published in Genetics (Austin) (01.03.2001)
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Journal Article
tef1, a Phytophthora infestans gene encoding translation elongation factor 1α
van't Klooster, John W., van den Berg-Velthuis, Grardy, van West, Pieter, Govers, Francine
Published in Gene (16.05.2000)
Published in Gene (16.05.2000)
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