Human genetics shape the gut microbiome
Goodrich, Julia K, Waters, Jillian L, Poole, Angela C, Sutter, Jessica L, Koren, Omry, Blekhman, Ran, Beaumont, Michelle, Van Treuren, William, Knight, Rob, Bell, Jordana T, Spector, Timothy D, Clark, Andrew G, Ley, Ruth E
Published in Cell (06.11.2014)
Published in Cell (06.11.2014)
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Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut
Seedorf, Henning, Griffin, Nicholas W., Ridaura, Vanessa K., Reyes, Alejandro, Cheng, Jiye, Rey, Federico E., Smith, Michelle I., Simon, Gabriel M., Scheffrahn, Rudolf H., Woebken, Dagmar, Spormann, Alfred M., Van Treuren, William, Ursell, Luke K., Pirrung, Megan, Robbins-Pianka, Adam, Cantarel, Brandi L., Lombard, Vincent, Henrissat, Bernard, Knight, Rob, Gordon, Jeffrey I.
Published in Cell (09.10.2014)
Published in Cell (09.10.2014)
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Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions
Hryckowian, Andrew J., Merrill, Bryan D., Porter, Nathan T., Van Treuren, William, Nelson, Eric J., Garlena, Rebecca A., Russell, Daniel A., Martens, Eric C., Sonnenburg, Justin L.
Published in Cell host & microbe (09.09.2020)
Published in Cell host & microbe (09.09.2020)
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The Clinical Drug Ebselen Attenuates Inflammation and Promotes Microbiome Recovery in Mice after Antibiotic Treatment for CDI
Garland, Megan, Hryckowian, Andrew J., Tholen, Martina, Oresic Bender, Kristina, Van Treuren, William W., Loscher, Sebastian, Sonnenburg, Justin L., Bogyo, Matthew
Published in Cell reports. Medicine (21.04.2020)
Published in Cell reports. Medicine (21.04.2020)
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Gut-microbiota-targeted diets modulate human immune status
Wastyk, Hannah C., Fragiadakis, Gabriela K., Perelman, Dalia, Dahan, Dylan, Merrill, Bryan D., Yu, Feiqiao B., Topf, Madeline, Gonzalez, Carlos G., Van Treuren, William, Han, Shuo, Robinson, Jennifer L., Elias, Joshua E., Sonnenburg, Erica D., Gardner, Christopher D., Sonnenburg, Justin L.
Published in Cell (05.08.2021)
Published in Cell (05.08.2021)
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Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs
Ng, Katharine Michelle, Aranda-Díaz, Andrés, Tropini, Carolina, Frankel, Matthew Ryan, Van Treuren, William, O’Loughlin, Colleen T., Merrill, Bryan Douglas, Yu, Feiqiao Brian, Pruss, Kali M., Oliveira, Rita Almeida, Higginbottom, Steven Kyle, Neff, Norma F., Fischbach, Michael Andrew, Xavier, Karina Bivar, Sonnenburg, Justin Laine, Huang, Kerwyn Casey
Published in Cell host & microbe (13.11.2019)
Published in Cell host & microbe (13.11.2019)
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Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid
Pruss, Kali M., Chen, Haoqing, Liu, Yuanyuan, Van Treuren, William, Higginbottom, Steven K., Jarman, John B., Fischer, Curt R., Mak, Justin, Wong, Beverly, Cowan, Tina M., Fischbach, Michael A., Sonnenburg, Justin L., Dodd, Dylan
Published in Nature communications (31.01.2023)
Published in Nature communications (31.01.2023)
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Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model
Hryckowian, Andrew J., Van Treuren, William, Smits, Samuel A., Davis, Nicole M., Gardner, Jackson O., Bouley, Donna M., Sonnenburg, Justin L.
Published in Nature microbiology (01.06.2018)
Published in Nature microbiology (01.06.2018)
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Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates
Pensinger, Daniel A, Fisher, Andrea T, Dobrila, Horia A, Van Treuren, William, Gardner, Jackson O, Higginbottom, Steven K, Carter, Matthew M, Schumann, Benjamin, Bertozzi, Carolyn R, Anikst, Victoria, Martin, Cody, Robilotti, Elizabeth V, Chow, Jo May, Buck, Rachael H, Tompkins, Lucy S, Sonnenburg, Justin L, Hryckowian, Andrew J
Published in Infection and immunity (16.02.2023)
Published in Infection and immunity (16.02.2023)
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Replenishing our defensive microbes
Ursell, Luke K., Treuren, William Van, Metcalf, Jessica L., Pirrung, Meg, Gewirtz, Andrew, Knight, Rob
Published in BioEssays (01.09.2013)
Published in BioEssays (01.09.2013)
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Clostridium sporogenes uses reductive Stickland metabolism in the gut to generate ATP and produce circulating metabolites
Liu, Yuanyuan, Chen, Haoqing, Van Treuren, William, Hou, Bi-Huei, Higginbottom, Steven K., Dodd, Dylan
Published in Nature microbiology (01.05.2022)
Published in Nature microbiology (01.05.2022)
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Journal Article
Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model
Hryckowian, Andrew J., Van Treuren, William, Smits, Samuel A., Davis, Nicole M., Gardner, Jackson O., Bouley, Donna M., Sonnenburg, Justin L.
Published in Nature microbiology (23.04.2018)
Published in Nature microbiology (23.04.2018)
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A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites
Dodd, Dylan, Spitzer, Matthew H., Van Treuren, William, Merrill, Bryan D., Hryckowian, Andrew J., Higginbottom, Steven K., Le, Anthony, Cowan, Tina M., Nolan, Garry P., Fischbach, Michael A., Sonnenburg, Justin L.
Published in Nature (London) (30.11.2017)
Published in Nature (London) (30.11.2017)
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Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice
Ridaura, Vanessa K., Faith, Jeremiah J., Rey, Federico E., Cheng, Jiye, Duncan, Alexis E., Kau, Andrew L., Griffin, Nicholas W., Lombard, Vincent, Henrissat, Bernard, Bain, James R., Muehlbauer, Michael J., Ilkayeva, Olga, Semenkovich, Clay F., Funai, Katsuhiko, Hayashi, David K., Lyle, Barbara J., Martini, Margaret C., Ursell, Luke K., Clemente, Jose C., Van Treuren, William, Walters, William A., Knight, Rob, Newgard, Christopher B., Heath, Andrew C., Gordon, Jeffrey I.
Published in Science (American Association for the Advancement of Science) (06.09.2013)
Published in Science (American Association for the Advancement of Science) (06.09.2013)
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Links between environment, diet, and the hunter-gatherer microbiome
Fragiadakis, Gabriela K., Smits, Samuel A., Sonnenburg, Erica D., Van Treuren, William, Reid, Gregor, Knight, Rob, Manjurano, Alphaxard, Changalucha, John, Dominguez-Bello, Maria Gloria, Leach, Jeff, Sonnenburg, Justin L.
Published in Gut microbes (01.01.2019)
Published in Gut microbes (01.01.2019)
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Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs
Ng, Katharine Michelle, Aranda-Díaz, Andrés, Tropini, Carolina, Frankel, Matthew Ryan, Van Treuren, William, O’Loughlin, Colleen T., Merrill, Bryan Douglas, Yu, Feiqiao Brian, Pruss, Kali M., Oliveira, Rita Almeida, Higginbottom, Steven Kyle, Neff, Norma F., Fischbach, Michael Andrew, Xavier, Karina Bivar, Sonnenburg, Justin Laine, Huang, Kerwyn Casey
Published in Cell host & microbe (07.10.2020)
Published in Cell host & microbe (07.10.2020)
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Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin
Loudon, Andrew H, Venkataraman, Arvind, Van Treuren, William, Woodhams, Douglas C, Parfrey, Laura Wegener, McKenzie, Valerie J, Knight, Rob, Schmidt, Thomas M, Harris, Reid N
Published in Frontiers in microbiology (16.03.2016)
Published in Frontiers in microbiology (16.03.2016)
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Oxidative ornithine metabolism supports non-inflammatory C. difficile colonization
Pruss, Kali M., Enam, Fatima, Battaglioli, Eric, DeFeo, Mary, Diaz, Oscar R., Higginbottom, Steven K., Fischer, Curt R., Hryckowian, Andrew J., Van Treuren, William, Dodd, Dylan, Kashyap, Purna, Sonnenburg, Justin L.
Published in Nature metabolism (01.01.2022)
Published in Nature metabolism (01.01.2022)
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Journal Article
Cultured gut microbiota from twins discordant for obesity modulate adiposity and metabolic phenotypes in mice
Ridaura, Vanessa K., Faith, Jeremiah J., Rey, Federico E., Cheng, Jiye, Duncan, Alexis E., Kau, Andrew L., Griffin, Nicholas W., Lombard, Vincent, Henrissat, Bernard, Bain, James R., Muehlbauer, Michael J., Ilkayeva, Olga, Semenkovich, Clay F., Funai, Katsuhiko, Hayashi, David K., Lyle, Barbara J., Martini, Margaret C., Ursell, Luke K., Clemente, Jose C., Van Treuren, William, Walters, William A., Knight, Rob, Newgard, Christopher B., Heath, Andrew C., Gordon, Jeffrey I.
Published in Science (American Association for the Advancement of Science) (06.09.2013)
Published in Science (American Association for the Advancement of Science) (06.09.2013)
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