A multi-tissue atlas of regulatory variants in cattle
Liu, Shuli, Gao, Yahui, Canela-Xandri, Oriol, Wang, Sheng, Yu, Ying, Cai, Wentao, Li, Bingjie, Xiang, Ruidong, Chamberlain, Amanda J., Pairo-Castineira, Erola, D’Mellow, Kenton, Rawlik, Konrad, Xia, Charley, Yao, Yuelin, Navarro, Pau, Rocha, Dominique, Li, Xiujin, Yan, Ze, Li, Congjun, Rosen, Benjamin D., Van Tassell, Curtis P., Vanraden, Paul M., Zhang, Shengli, Ma, Li, Cole, John B., Liu, George E., Tenesa, Albert, Fang, Lingzhao
Published in Nature genetics (01.09.2022)
Published in Nature genetics (01.09.2022)
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Genomic signatures reveal new evidences for selection of important traits in domestic cattle
Xu, Lingyang, Bickhart, Derek M, Cole, John B, Schroeder, Steven G, Song, Jiuzhou, Tassell, Curtis P Van, Sonstegard, Tad S, Liu, George E
Published in Molecular biology and evolution (01.03.2015)
Published in Molecular biology and evolution (01.03.2015)
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De novo assembly of the cattle reference genome with single-molecule sequencing
Rosen, Benjamin D, Bickhart, Derek M, Schnabel, Robert D, Koren, Sergey, Elsik, Christine G, Tseng, Elizabeth, Rowan, Troy N, Low, Wai Y, Zimin, Aleksey, Couldrey, Christine, Hall, Richard, Li, Wenli, Rhie, Arang, Ghurye, Jay, McKay, Stephanie D, Thibaud-Nissen, Françoise, Hoffman, Jinna, Murdoch, Brenda M, Snelling, Warren M, McDaneld, Tara G, Hammond, John A, Schwartz, John C, Nandolo, Wilson, Hagen, Darren E, Dreischer, Christian, Schultheiss, Sebastian J, Schroeder, Steven G, Phillippy, Adam M, Cole, John B, Van Tassell, Curtis P, Liu, George, Smith, Timothy P L, Medrano, Juan F
Published in Gigascience (01.03.2020)
Published in Gigascience (01.03.2020)
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Development and Characterization of a High Density SNP Genotyping Assay for Cattle
Matukumalli, Lakshmi K, Lawley, Cynthia T, Schnabel, Robert D, Taylor, Jeremy F, Allan, Mark F, Heaton, Michael P, O'Connell, Jeff, Moore, Stephen S, Smith, Timothy P.L, Sonstegard, Tad S, Van Tassell, Curtis P
Published in PloS one (24.04.2009)
Published in PloS one (24.04.2009)
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Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows
Cole, John B, Wiggans, George R, Ma, Li, Sonstegard, Tad S, Lawlor, Jr, Thomas J, Crooker, Brian A, Van Tassell, Curtis P, Yang, Jing, Wang, Shengwen, Matukumalli, Lakshmi K, Da, Yang
Published in BMC genomics (11.08.2011)
Published in BMC genomics (11.08.2011)
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Effect of artificial selection on runs of homozygosity in u.s. Holstein cattle
Kim, Eui-Soo, Cole, John B, Huson, Heather, Wiggans, George R, Van Tassell, Curtis P, Crooker, Brian A, Liu, George, Da, Yang, Sonstegard, Tad S
Published in PloS one (14.11.2013)
Published in PloS one (14.11.2013)
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Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection
García-Ruiz, Adriana, Cole, John B., VanRaden, Paul M., Wiggans, George R., Ruiz-López, Felipe J., Van Tassell, Curtis P.
Published in Proceedings of the National Academy of Sciences - PNAS (12.07.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (12.07.2016)
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The Relationship between Runs of Homozygosity and Inbreeding in Jersey Cattle under Selection
Kim, Eui-Soo, Sonstegard, Tad S, Van Tassell, Curtis P, Wiggans, George, Rothschild, Max F
Published in PloS one (08.07.2015)
Published in PloS one (08.07.2015)
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PreciseEdge raster RGB image segmentation algorithm reduces user input for livestock digital body measurements highly correlated to real-world measurements
Woodward-Greene, M Jennifer, Kinser, Jason M, Sonstegard, Tad S, Sölkner, Johann, Vaisman, Iosif I, Van Tassell, Curtis P
Published in PloS one (13.10.2022)
Published in PloS one (13.10.2022)
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Invited review: Reliability computation from the animal model era to the single-step genomic model era
Ben Zaabza, Hafedh, Van Tassell, Curtis P., Vandenplas, Jeremie, VanRaden, Paul, Liu, Zengting, Eding, Herwin, McKay, Stephanie, Haugaard, Katrine, Lidauer, Martin H., Mäntysaari, Esa A., Strandén, Ismo
Published in Journal of dairy science (01.03.2023)
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Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3
McClure, Matthew C, Bickhart, Derek, Null, Dan, Vanraden, Paul, Xu, Lingyang, Wiggans, George, Liu, George, Schroeder, Steve, Glasscock, Jarret, Armstrong, Jon, Cole, John B, Van Tassell, Curtis P, Sonstegard, Tad S
Published in PloS one (25.03.2014)
Published in PloS one (25.03.2014)
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Design of a bovine low-density SNP array optimized for imputation
Boichard, Didier, Chung, Hoyoung, Dassonneville, Romain, David, Xavier, Eggen, André, Fritz, Sébastien, Gietzen, Kimberly J, Hayes, Ben J, Lawley, Cynthia T, Sonstegard, Tad S, Van Tassell, Curtis P, VanRaden, Paul M, Viaud-Martinez, Karine A, Wiggans, George R
Published in PloS one (28.03.2012)
Published in PloS one (28.03.2012)
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Estimating test-day milk yields by modeling proportional daily yields: Going beyond linearity
Wu, Xiao-Lin, Wiggans, George R, Norman, H Duane, Enzenauer, Heather A, Miles, Asha M, Van Tassell, Curtis P, Baldwin, 6th, Ransom L, Burchard, Javier, Dürr, João
Published in Journal of dairy science (01.12.2023)
Published in Journal of dairy science (01.12.2023)
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Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle
Sonstegard, Tad S, Cole, John B, VanRaden, Paul M, Van Tassell, Curtis P, Null, Daniel J, Schroeder, Steven G, Bickhart, Derek, McClure, Matthew C
Published in PloS one (22.01.2013)
Published in PloS one (22.01.2013)
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Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
Hou, Yali, Bickhart, Derek M, Hvinden, Miranda L, Li, Congjun, Song, Jiuzhou, Boichard, Didier A, Fritz, Sébastien, Eggen, André, DeNise, Sue, Wiggans, George R, Sonstegard, Tad S, Van Tassell, Curtis P, Liu, George E
Published in BMC genomics (06.08.2012)
Published in BMC genomics (06.08.2012)
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Whole genome structural analysis of Caribbean hair sheep reveals quantitative link to West African ancestry
Spangler, Gordon L, Rosen, Benjamin D, Ilori, Moses Babatunde, Hanotte, Olivier, Kim, Eui-Soo, Sonstegard, Tad S, Burke, Joan M, Morgan, James L M, Notter, David R, Van Tassell, Curtis P
Published in PloS one (29.06.2017)
Published in PloS one (29.06.2017)
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Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
Bickhart, Derek M, Watson, Mick, Koren, Sergey, Panke-Buisse, Kevin, Cersosimo, Laura M, Press, Maximilian O, Van Tassell, Curtis P, Van Kessel, Jo Ann S, Haley, Bradd J, Kim, Seon Woo, Heiner, Cheryl, Suen, Garret, Bakshy, Kiranmayee, Liachko, Ivan, Sullivan, Shawn T, Myer, Phillip R, Ghurye, Jay, Pop, Mihai, Weimer, Paul J, Phillippy, Adam M, Smith, Timothy P L
Published in Genome Biology (02.08.2019)
Published in Genome Biology (02.08.2019)
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Copy number variation of individual cattle genomes using next-generation sequencing
Bickhart, Derek M, Hou, Yali, Schroeder, Steven G, Alkan, Can, Cardone, Maria Francesca, Matukumalli, Lakshmi K, Song, Jiuzhou, Schnabel, Robert D, Ventura, Mario, Taylor, Jeremy F, Garcia, Jose Fernando, Van Tassell, Curtis P, Sonstegard, Tad S, Eichler, Evan E, Liu, George E
Published in Genome research (01.04.2012)
Published in Genome research (01.04.2012)
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Signatures of selection and environmental adaptation across the goat genome post-domestication
Bertolini, Francesca, Servin, Bertrand, Talenti, Andrea, Rochat, Estelle, Kim, Eui Soo, Oget, Claire, Palhière, Isabelle, Crisà, Alessandra, Catillo, Gennaro, Steri, Roberto, Amills, Marcel, Colli, Licia, Marras, Gabriele, Milanesi, Marco, Nicolazzi, Ezequiel, Rosen, Benjamin D, Van Tassell, Curtis P, Guldbrandtsen, Bernt, Sonstegard, Tad S, Tosser-Klopp, Gwenola, Stella, Alessandra, Rothschild, Max F, Joost, Stéphane, Crepaldi, Paola
Published in Genetics selection evolution (Paris) (19.11.2018)
Published in Genetics selection evolution (Paris) (19.11.2018)
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Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm
Zhou, Yang, Connor, Erin E, Bickhart, Derek M, Li, Congjun, Baldwin, Ransom L, Schroeder, Steven G, Rosen, Benjamin D, Yang, Liguo, Van Tassell, Curtis P, Liu, George E
Published in Gigascience (01.05.2018)
Published in Gigascience (01.05.2018)
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