The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Perez-Riverol, Yasset, Bai, Jingwen, Bandla, Chakradhar, García-Seisdedos, David, Hewapathirana, Suresh, Kamatchinathan, Selvakumar, Kundu, Deepti J, Prakash, Ananth, Frericks-Zipper, Anika, Eisenacher, Martin, Walzer, Mathias, Wang, Shengbo, Brazma, Alvis, Vizcaíno, Juan Antonio
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
Get full text
Journal Article
2016 update of the PRIDE database and its related tools
Vizcaíno, Juan Antonio, Csordas, Attila, Del-Toro, Noemi, Dianes, José A, Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Published in Nucleic acids research (15.12.2016)
Published in Nucleic acids research (15.12.2016)
Get full text
Journal Article
The ProteomeXchange consortium at 10 years: 2023 update
Deutsch, Eric W, Bandeira, Nuno, Perez-Riverol, Yasset, Sharma, Vagisha, Carver, Jeremy J, Mendoza, Luis, Kundu, Deepti J, Wang, Shengbo, Bandla, Chakradhar, Kamatchinathan, Selvakumar, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan Antonio
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
Get full text
Journal Article
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Perez-Riverol, Yasset, Csordas, Attila, Bai, Jingwen, Bernal-Llinares, Manuel, Hewapathirana, Suresh, Kundu, Deepti J, Inuganti, Avinash, Griss, Johannes, Mayer, Gerhard, Eisenacher, Martin, Pérez, Enrique, Uszkoreit, Julian, Pfeuffer, Julianus, Sachsenberg, Timo, Yılmaz, Şule, Tiwary, Shivani, Cox, Jürgen, Audain, Enrique, Walzer, Mathias, Jarnuczak, Andrew F, Ternent, Tobias, Brazma, Alvis, Vizcaíno, Juan Antonio
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
Get full text
Journal Article
Expression Atlas update: from tissues to single cells
Papatheodorou, Irene, Moreno, Pablo, Manning, Jonathan, Fuentes, Alfonso Muñoz-Pomer, George, Nancy, Fexova, Silvie, Fonseca, Nuno A, Füllgrabe, Anja, Green, Matthew, Huang, Ni, Huerta, Laura, Iqbal, Haider, Jianu, Monica, Mohammed, Suhaib, Zhao, Lingyun, Jarnuczak, Andrew F, Jupp, Simon, Marioni, John, Meyer, Kerstin, Petryszak, Robert, Prada Medina, Cesar Augusto, Talavera-López, Carlos, Teichmann, Sarah, Vizcaino, Juan Antonio, Brazma, Alvis
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
Get full text
Journal Article
2016 update of the PRIDE database and its related tools
Vizcaíno, Juan Antonio, Csordas, Attila, del-Toro, Noemi, Dianes, José A, Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
Get full text
Journal Article
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
Deutsch, Eric W, Csordas, Attila, Sun, Zhi, Jarnuczak, Andrew, Perez-Riverol, Yasset, Ternent, Tobias, Campbell, David S, Bernal-Llinares, Manuel, Okuda, Shujiro, Kawano, Shin, Moritz, Robert L, Carver, Jeremy J, Wang, Mingxun, Ishihama, Yasushi, Bandeira, Nuno, Hermjakob, Henning, Vizcaíno, Juan Antonio
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
Get full text
Journal Article
Expression Atlas: gene and protein expression across multiple studies and organisms
Papatheodorou, Irene, Fonseca, Nuno A, Keays, Maria, Tang, Y Amy, Barrera, Elisabet, Bazant, Wojciech, Burke, Melissa, Füllgrabe, Anja, Fuentes, Alfonso Muñoz-Pomer, George, Nancy, Huerta, Laura, Koskinen, Satu, Mohammed, Suhaib, Geniza, Matthew, Preece, Justin, Jaiswal, Pankaj, Jarnuczak, Andrew F, Huber, Wolfgang, Stegle, Oliver, Vizcaino, Juan Antonio, Brazma, Alvis, Petryszak, Robert
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
Get full text
Journal Article
Shorthand notation for lipid structures derived from mass spectrometry
Liebisch, Gerhard, Vizcaíno, Juan Antonio, Köfeler, Harald, Trötzmüller, Martin, Griffiths, William J., Schmitz, Gerd, Spener, Friedrich, Wakelam, Michael J.O.
Published in Journal of lipid research (01.06.2013)
Published in Journal of lipid research (01.06.2013)
Get full text
Journal Article
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
Vizcaíno, Juan Antonio, Côté, Richard G, Csordas, Attila, Dianes, José A, Fabregat, Antonio, Foster, Joseph M, Griss, Johannes, Alpi, Emanuele, Birim, Melih, Contell, Javier, O'Kelly, Gavin, Schoenegger, Andreas, Ovelleiro, David, Pérez-Riverol, Yasset, Reisinger, Florian, Ríos, Daniel, Wang, Rui, Hermjakob, Henning
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
Get full text
Journal Article
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022
Thakur, Matthew, Bateman, Alex, Brooksbank, Cath, Freeberg, Mallory, Harrison, Melissa, Hartley, Matthew, Keane, Thomas, Kleywegt, Gerard, Leach, Andrew, Levchenko, Mariia, Morgan, Sarah, McDonagh, Ellen M, Orchard, Sandra, Papatheodorou, Irene, Velankar, Sameer, Vizcaino, Juan Antonio, Witham, Rick, Zdrazil, Barbara, McEntyre, Johanna
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
Get full text
Journal Article
The growing need for controlled data access models in clinical proteomics and metabolomics
Keane, Thomas M., O’Donovan, Claire, Vizcaíno, Juan Antonio
Published in Nature communications (01.10.2021)
Published in Nature communications (01.10.2021)
Get full text
Journal Article
Quantifying the impact of public omics data
Perez-Riverol, Yasset, Zorin, Andrey, Dass, Gaurhari, Vu, Manh-Tu, Xu, Pan, Glont, Mihai, Vizcaíno, Juan Antonio, Jarnuczak, Andrew F, Petryszak, Robert, Ping, Peipei, Hermjakob, Henning
Published in Nature communications (05.08.2019)
Published in Nature communications (05.08.2019)
Get full text
Journal Article
Accurate and fast feature selection workflow for high-dimensional omics data
Perez-Riverol, Yasset, Kuhn, Max, Vizcaíno, Juan Antonio, Hitz, Marc-Phillip, Audain, Enrique
Published in PloS one (20.12.2017)
Published in PloS one (20.12.2017)
Get full text
Journal Article
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work
Deutsch, Eric W, Orchard, Sandra, Binz, Pierre-Alain, Bittremieux, Wout, Eisenacher, Martin, Hermjakob, Henning, Kawano, Shin, Lam, Henry, Mayer, Gerhard, Menschaert, Gerben, Perez-Riverol, Yasset, Salek, Reza M, Tabb, David L, Tenzer, Stefan, Vizcaíno, Juan Antonio, Walzer, Mathias, Jones, Andrew R
Published in Journal of proteome research (01.12.2017)
Published in Journal of proteome research (01.12.2017)
Get full text
Journal Article
Expression Atlas update: gene and protein expression in multiple species
Moreno, Pablo, Fexova, Silvie, George, Nancy, Manning, Jonathan R, Miao, Zhichiao, Mohammed, Suhaib, Muñoz-Pomer, Alfonso, Fullgrabe, Anja, Bi, Yalan, Bush, Natassja, Iqbal, Haider, Kumbham, Upendra, Solovyev, Andrey, Zhao, Lingyun, Prakash, Ananth, García-Seisdedos, David, Kundu, Deepti J, Wang, Shengbo, Walzer, Mathias, Clarke, Laura, Osumi-Sutherland, David, Tello-Ruiz, Marcela Karey, Kumari, Sunita, Ware, Doreen, Eliasova, Jana, Arends, Mark J, Nawijn, Martijn C, Meyer, Kerstin, Burdett, Tony, Marioni, John, Teichmann, Sarah, Vizcaíno, Juan Antonio, Brazma, Alvis, Papatheodorou, Irene
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
Get full text
Journal Article
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
Griss, Johannes, Perez-Riverol, Yasset, Lewis, Steve, Tabb, David L, Dianes, José A, Del-Toro, Noemi, Rurik, Marc, Walzer, Mathias W, Kohlbacher, Oliver, Hermjakob, Henning, Wang, Rui, Vizcaíno, Juan Antonio
Published in Nature methods (01.08.2016)
Published in Nature methods (01.08.2016)
Get full text
Journal Article
Integrated View of Baseline Protein Expression in Human Tissues
Prakash, Ananth, García-Seisdedos, David, Wang, Shengbo, Kundu, Deepti Jaiswal, Collins, Andrew, George, Nancy, Moreno, Pablo, Papatheodorou, Irene, Jones, Andrew R., Vizcaíno, Juan Antonio
Published in Journal of proteome research (03.03.2023)
Published in Journal of proteome research (03.03.2023)
Get full text
Journal Article