Current Concepts and Advances in Graft-Versus-Host Disease Immunology
Hill, Geoffrey R, Betts, Brian C, Tkachev, Victor, Kean, Leslie S, Blazar, Bruce R
Published in Annual review of immunology (26.04.2021)
Published in Annual review of immunology (26.04.2021)
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Cancer gene expression profiles associated with clinical outcomes to chemotherapy treatments
Borisov, Nicolas, Sorokin, Maxim, Tkachev, Victor, Garazha, Andrew, Buzdin, Anton
Published in BMC medical genomics (18.09.2020)
Published in BMC medical genomics (18.09.2020)
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Shambhala: a platform-agnostic data harmonizer for gene expression data
Borisov, Nicolas, Shabalina, Irina, Tkachev, Victor, Sorokin, Maxim, Garazha, Andrew, Pulin, Andrey, Eremin, Ilya I, Buzdin, Anton
Published in BMC bioinformatics (06.02.2019)
Published in BMC bioinformatics (06.02.2019)
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Flexible Data Trimming Improves Performance of Global Machine Learning Methods in Omics-Based Personalized Oncology
Tkachev, Victor, Sorokin, Maxim, Borisov, Constantin, Garazha, Andrew, Buzdin, Anton, Borisov, Nicolas
Published in International journal of molecular sciences (22.01.2020)
Published in International journal of molecular sciences (22.01.2020)
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Next-Generation Grade and Survival Expression Biomarkers of Human Gliomas Based on Algorithmically Reconstructed Molecular Pathways
Zolotovskaia, Marianna A, Kovalenko, Max A, Tkachev, Victor S, Simonov, Alexander M, Sorokin, Maxim I, Kim, Ella, Kuzmin, Denis V, Karademir-Yilmaz, Betul, Buzdin, Anton A
Published in International journal of molecular sciences (30.06.2022)
Published in International journal of molecular sciences (30.06.2022)
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Journal Article
Better Agreement of Human Transcriptomic and Proteomic Cancer Expression Data at the Molecular Pathway Activation Level
Raevskiy, Mikhail, Sorokin, Maxim, Zakharova, Galina, Tkachev, Victor, Borisov, Nicolas, Kuzmin, Denis, Kremenchutckaya, Kristina, Gudkov, Alexander, Kamashev, Dmitry, Buzdin, Anton
Published in International journal of molecular sciences (26.02.2022)
Published in International journal of molecular sciences (26.02.2022)
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Pan-cancer antagonistic inhibition pattern of ATM-driven G2/M checkpoint pathway vs other DNA repair pathways
Zolotovskaia, Marianna A., Modestov, Alexander A., Suntsova, Maria V., Rachkova, Anastasia A., Koroleva, Elena V., Poddubskaya, Elena V., Sekacheva, Marina I., Tkachev, Victor S., Garazha, Andrew V., Glusker, Alexander A., Seryakov, Aleksander P., Vladimirova, Uliana S., Rumiantsev, Pavel O., Moisseev, Aleksey A., Zharkov, Dmitry O., Kuzmin, Denis V., Zhao, Xiaowen, Prassolov, Vladimir S., Shegay, Petr V., Li, Xinmin, Steinbichler, Teresa B., Kim, Ella, Sorokin, Maxim I., Wang, Ye, Buzdin, Anton A.
Published in DNA repair (01.03.2023)
Published in DNA repair (01.03.2023)
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Disparity between Inter-Patient Molecular Heterogeneity and Repertoires of Target Drugs Used for Different Types of Cancer in Clinical Oncology
Zolotovskaia, Marianna A, Sorokin, Maxim I, Petrov, Ivan V, Poddubskaya, Elena V, Moiseev, Alexey A, Sekacheva, Marina I, Borisov, Nicolas M, Tkachev, Victor S, Garazha, Andrew V, Kaprin, Andrey D, Shegay, Peter V, Giese, Alf, Kim, Ella, Roumiantsev, Sergey A, Buzdin, Anton A
Published in International journal of molecular sciences (26.02.2020)
Published in International journal of molecular sciences (26.02.2020)
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Number of human protein interactions correlates with structural, but not regulatory conservation of the respective genes
Mekic, Rijalda, Zolotovskaia, Marianna A., Sorokin, Maksim, Mohammad, Tharaa, Shaban, Nina, Musatov, Ivan, Tkachev, Victor, Modestov, Alexander, Simonov, Alexander, Kuzmin, Denis, Buzdin, Anton
Published in Frontiers in genetics (29.10.2024)
Published in Frontiers in genetics (29.10.2024)
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Journal Article
OncoboxPD: human 51 672 molecular pathways database with tools for activity calculating and visualization
Zolotovskaia, Marianna A., Tkachev, Victor S., Guryanova, Anastasia A., Simonov, Alexander M., Raevskiy, Mikhail M., Efimov, Victor V., Wang, Ye, Sekacheva, Marina I., Garazha, Andrew V., Borisov, Nicolas M., Kuzmin, Denis V., Sorokin, Maxim I., Buzdin, Anton A.
Published in Computational and structural biotechnology journal (01.01.2022)
Published in Computational and structural biotechnology journal (01.01.2022)
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Pan-cancer experimental characteristic of human transcriptional patterns connected with telomerase reverse transcriptase ( TERT ) gene expression status
Drobyshev, Aleksey, Modestov, Alexander, Suntsova, Maria, Poddubskaya, Elena, Seryakov, Alexander, Moisseev, Aleksey, Sorokin, Maksim, Tkachev, Victor, Zakharova, Galina, Simonov, Aleksander, Zolotovskaia, Marianna A, Buzdin, Anton
Published in Frontiers in genetics (27.05.2024)
Published in Frontiers in genetics (27.05.2024)
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H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 Histone Tags Suggest Distinct Regulatory Evolution of Open and Condensed Chromatin Landmarks
Igolkina, Anna A, Zinkevich, Arsenii, Karandasheva, Kristina O, Popov, Aleksey A, Selifanova, Maria V, Nikolaeva, Daria, Tkachev, Victor, Penzar, Dmitry, Nikitin, Daniil M, Buzdin, Anton
Published in Cells (Basel, Switzerland) (05.09.2019)
Published in Cells (Basel, Switzerland) (05.09.2019)
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Identification and Tracking of Alloreactive T Cell Clones in Rhesus Macaques Through the RM-scTCR-Seq Platform
Gerdemann, Ulrike, Fleming, Ryan A, Kaminski, James, McGuckin, Connor, Rui, Xianliang, Lane, Jennifer F, Keskula, Paula, Cagnin, Lorenzo, Shalek, Alex K, Tkachev, Victor, Kean, Leslie S
Published in Frontiers in immunology (26.01.2022)
Published in Frontiers in immunology (26.01.2022)
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Journal Article
Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins
Nikitin, Daniil, Penzar, Dmitry, Garazha, Andrew, Sorokin, Maxim, Tkachev, Victor, Borisov, Nicolas, Poltorak, Alexander, Prassolov, Vladimir, Buzdin, Anton A
Published in Frontiers in immunology (30.01.2018)
Published in Frontiers in immunology (30.01.2018)
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Machine Learning Applicability for Classification of PAD/VCD Chemotherapy Response Using 53 Multiple Myeloma RNA Sequencing Profiles
Borisov, Nicolas, Sergeeva, Anna, Suntsova, Maria, Raevskiy, Mikhail, Gaifullin, Nurshat, Mendeleeva, Larisa, Gudkov, Alexander, Nareiko, Maria, Garazha, Andrew, Tkachev, Victor, Li, Xinmin, Sorokin, Maxim, Surin, Vadim, Buzdin, Anton
Published in Frontiers in oncology (15.04.2021)
Published in Frontiers in oncology (15.04.2021)
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FLOating-Window Projective Separator (FloWPS): A Data Trimming Tool for Support Vector Machines (SVM) to Improve Robustness of the Classifier
Tkachev, Victor, Sorokin, Maxim, Mescheryakov, Artem, Simonov, Alexander, Garazha, Andrew, Buzdin, Anton, Muchnik, Ilya, Borisov, Nicolas
Published in Frontiers in genetics (15.01.2019)
Published in Frontiers in genetics (15.01.2019)
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Transcriptome analysis of GVHD reveals aurora kinase A as a targetable pathway for disease prevention
Furlan, Scott N, Watkins, Benjamin, Tkachev, Victor, Flynn, Ryan, Cooley, Sarah, Ramakrishnan, Swetha, Singh, Karnail, Giver, Cindy, Hamby, Kelly, Stempora, Linda, Garrett, Aneesah, Chen, Jingyang, Betz, Kayla M, Ziegler, Carly G K, Tharp, Gregory K, Bosinger, Steven E, Promislow, Daniel E L, Miller, Jeffrey S, Waller, Edmund K, Blazar, Bruce R, Kean, Leslie S
Published in Science translational medicine (25.11.2015)
Published in Science translational medicine (25.11.2015)
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Uniformly shaped harmonization combines human transcriptomic data from different platforms while retaining their biological properties and differential gene expression patterns
Borisov, Nicolas, Tkachev, Victor, Simonov, Alexander, Sorokin, Maxim, Kim, Ella, Kuzmin, Denis, Karademir-Yilmaz, Betul, Buzdin, Anton
Published in Frontiers in molecular biosciences (06.09.2023)
Published in Frontiers in molecular biosciences (06.09.2023)
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Mutation Enrichment and Transcriptomic Activation Signatures of 419 Molecular Pathways in Cancer
Zolotovskaia, Marianna A, Tkachev, Victor S, Seryakov, Alexander P, Kuzmin, Denis V, Kamashev, Dmitry E, Sorokin, Maxim I, Roumiantsev, Sergey A, Buzdin, Anton A
Published in Cancers (22.01.2020)
Published in Cancers (22.01.2020)
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Algorithmically Reconstructed Molecular Pathways as the New Generation of Prognostic Molecular Biomarkers in Human Solid Cancers
Zolotovskaia, Marianna, Kovalenko, Maks, Pugacheva, Polina, Tkachev, Victor, Simonov, Alexander, Sorokin, Maxim, Seryakov, Alexander, Garazha, Andrew, Gaifullin, Nurshat, Sekacheva, Marina, Zakharova, Galina, Buzdin, Anton A
Published in Proteomes (25.08.2023)
Published in Proteomes (25.08.2023)
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