DNA methylation of the first exon is tightly linked to transcriptional silencing
Brenet, Fabienne, Moh, Michelle, Funk, Patricia, Feierstein, Erika, Viale, Agnes J, Socci, Nicholas D, Scandura, Joseph M
Published in PloS one (18.01.2011)
Published in PloS one (18.01.2011)
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Intestinal microbiome analyses identify melanoma patients at risk for checkpoint-blockade-induced colitis
Dubin, Krista, Callahan, Margaret K, Ren, Boyu, Khanin, Raya, Viale, Agnes, Ling, Lilan, No, Daniel, Gobourne, Asia, Littmann, Eric, Huttenhower, Curtis, Pamer, Eric G, Wolchok, Jedd D
Published in Nature communications (02.02.2016)
Published in Nature communications (02.02.2016)
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The Genomic Landscape of Endocrine-Resistant Advanced Breast Cancers
Razavi, Pedram, Chang, Matthew T., Xu, Guotai, Bandlamudi, Chaitanya, Ross, Dara S., Vasan, Neil, Cai, Yanyan, Bielski, Craig M., Donoghue, Mark T.A., Jonsson, Philip, Penson, Alexander, Shen, Ronglai, Pareja, Fresia, Kundra, Ritika, Middha, Sumit, Cheng, Michael L., Zehir, Ahmet, Kandoth, Cyriac, Patel, Ruchi, Huberman, Kety, Smyth, Lillian M., Jhaveri, Komal, Modi, Shanu, Traina, Tiffany A., Dang, Chau, Zhang, Wen, Weigelt, Britta, Li, Bob T., Ladanyi, Marc, Hyman, David M., Schultz, Nikolaus, Robson, Mark E., Hudis, Clifford, Brogi, Edi, Viale, Agnes, Norton, Larry, Dickler, Maura N., Berger, Michael F., Iacobuzio-Donahue, Christine A., Chandarlapaty, Sarat, Scaltriti, Maurizio, Reis-Filho, Jorge S., Solit, David B., Taylor, Barry S., Baselga, José
Published in Cancer cell (10.09.2018)
Published in Cancer cell (10.09.2018)
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Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice
Ubeda, Carles, Lipuma, Lauren, Gobourne, Asia, Viale, Agnes, Leiner, Ingrid, Equinda, Michele, Khanin, Raya, Pamer, Eric G
Published in The Journal of experimental medicine (30.07.2012)
Published in The Journal of experimental medicine (30.07.2012)
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The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation
Taur, Ying, Jenq, Robert R., Perales, Miguel-Angel, Littmann, Eric R., Morjaria, Sejal, Ling, Lilan, No, Daniel, Gobourne, Asia, Viale, Agnes, Dahi, Parastoo B., Ponce, Doris M., Barker, Juliet N., Giralt, Sergio, van den Brink, Marcel, Pamer, Eric G.
Published in Blood (14.08.2014)
Published in Blood (14.08.2014)
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Clinical Sequencing Defines the Genomic Landscape of Metastatic Colorectal Cancer
Yaeger, Rona, Chatila, Walid K., Lipsyc, Marla D., Hechtman, Jaclyn F., Cercek, Andrea, Sanchez-Vega, Francisco, Jayakumaran, Gowtham, Middha, Sumit, Zehir, Ahmet, Donoghue, Mark T.A., You, Daoqi, Viale, Agnes, Kemeny, Nancy, Segal, Neil H., Stadler, Zsofia K., Varghese, Anna M., Kundra, Ritika, Gao, Jianjiong, Syed, Aijazuddin, Hyman, David M., Vakiani, Efsevia, Rosen, Neal, Taylor, Barry S., Ladanyi, Marc, Berger, Michael F., Solit, David B., Shia, Jinru, Saltz, Leonard, Schultz, Nikolaus
Published in Cancer cell (08.01.2018)
Published in Cancer cell (08.01.2018)
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Evaluating Cancer of the Central Nervous System Through Next-Generation Sequencing of Cerebrospinal Fluid
Pentsova, Elena I, Shah, Ronak H, Tang, Jiabin, Boire, Adrienne, You, Daoqi, Briggs, Samuel, Omuro, Antonio, Lin, Xuling, Fleisher, Martin, Grommes, Christian, Panageas, Katherine S, Meng, Fanli, Selcuklu, S Duygu, Ogilvie, Shahiba, Distefano, Natalie, Shagabayeva, Larisa, Rosenblum, Marc, DeAngelis, Lisa M, Viale, Agnes, Mellinghoff, Ingo K, Berger, Michael F
Published in Journal of clinical oncology (10.07.2016)
Published in Journal of clinical oncology (10.07.2016)
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Profound Alterations of Intestinal Microbiota following a Single Dose of Clindamycin Results in Sustained Susceptibility to Clostridium difficile-Induced Colitis
Buffie, Charlie G, Jarchum, Irene, Equinda, Michele, Lipuma, Lauren, Gobourne, Asia, Viale, Agnes, Ubeda, Carles, Xavier, Joao, Pamer, Eric G
Published in Infection and Immunity (01.01.2012)
Published in Infection and Immunity (01.01.2012)
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Intestinal Domination and the Risk of Bacteremia in Patients Undergoing Allogeneic Hematopoietic Stem Cell Transplantation
Taur, Ying, Xavier, Joao B., Lipuma, Lauren, Ubeda, Carles, Goldberg, Jenna, Gobourne, Asia, Lee, Yeon Joo, Dubin, Krista A., Socci, Nicholas D., Viale, Agnes, Perales, Miguel-Angel, Jenq, Robert R., van den Brink, Marcel R. M., Pamer, Eric G.
Published in Clinical infectious diseases (01.10.2012)
Published in Clinical infectious diseases (01.10.2012)
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Constitutively active androgen receptor splice variants expressed in castration-resistant prostate cancer require full-length androgen receptor
Watson, Philip A., Chen, Yinan F., Balbas, Minna D., Wongvipat, John, Socci, Nicholas D., Viale, Agnes, Kim, Kwanghee, Sawyers, Charles L.
Published in Proceedings of the National Academy of Sciences - PNAS (28.09.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (28.09.2010)
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PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors
Lee, William, Teckie, Sewit, Wiesner, Thomas, Ran, Leili, Prieto Granada, Carlos N, Lin, Mingyan, Zhu, Sinan, Cao, Zhen, Liang, Yupu, Sboner, Andrea, Tap, William D, Fletcher, Jonathan A, Huberman, Kety H, Qin, Li-Xuan, Viale, Agnes, Singer, Samuel, Zheng, Deyou, Berger, Michael F, Chen, Yu, Antonescu, Cristina R, Chi, Ping
Published in Nature genetics (01.11.2014)
Published in Nature genetics (01.11.2014)
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Phase 1b trial of an ibrutinib-based combination therapy in recurrent/refractory CNS lymphoma
Grommes, Christian, Tang, Sarah S., Wolfe, Julia, Kaley, Thomas J., Daras, Mariza, Pentsova, Elena I., Piotrowski, Anna F., Stone, Jacqueline, Lin, Andrew, Nolan, Craig P., Manne, Malbora, Codega, Paolo, Campos, Carl, Viale, Agnes, Thomas, Alissa A., Berger, Michael F., Hatzoglou, Vaios, Reiner, Anne S., Panageas, Katherine S., DeAngelis, Lisa M., Mellinghoff, Ingo K.
Published in Blood (31.01.2019)
Published in Blood (31.01.2019)
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IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype
TURCAN, Sevin, ROHLE, Daniel, THOMPSON, Craig B, KAUFMAN, Andrew, GURYANOVA, Olga, LEVINE, Ross, HEGUY, Adriana, VIALE, Agnes, MORRIS, Luc G. T, HUSE, Jason T, MELLINGHOFF, Ingo K, CHAN, Timothy A, GOENKA, Anuj, WALSH, Logan A, FANG FANG, YILMAZ, Emrullah, CAMPOS, Carl, FABIUS, Armida W. M, CHAO LU, WARD, Patrick S
Published in Nature (London) (15.02.2012)
Published in Nature (London) (15.02.2012)
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Ovarian cancer mutational processes drive site-specific immune evasion
Vázquez-García, Ignacio, Uhlitz, Florian, Ceglia, Nicholas, Lim, Jamie L P, Wu, Michelle, Mohibullah, Neeman, Niyazov, Juliana, Ruiz, Arvin Eric B, Boehm, Kevin M, Bojilova, Viktoria, Fong, Christopher J, Funnell, Tyler, Grewal, Diljot, Havasov, Eliyahu, Leung, Samantha, Pasha, Arfath, Patel, Druv M, Pourmaleki, Maryam, Rusk, Nicole, Shi, Hongyu, Vanguri, Rami, Williams, Marc J, Zhang, Allen W, Broach, Vance, Chi, Dennis S, Da Cruz Paula, Arnaud, Gardner, Ginger J, Kim, Sarah H, Lennon, Matthew, Long Roche, Kara, Sonoda, Yukio, Zivanovic, Oliver, Kundra, Ritika, Viale, Agnes, Derakhshan, Fatemeh N, Geneslaw, Luke, Issa Bhaloo, Shirin, Maroldi, Ana, Nunez, Rahelly, Pareja, Fresia, Stylianou, Anthe, Vahdatinia, Mahsa, Bykov, Yonina, Grisham, Rachel N, Liu, Ying L, Lakhman, Yulia, Nikolovski, Ines, Kelly, Daniel, Gao, Jianjiong, Schietinger, Andrea, Hollmann, Travis J, Bakhoum, Samuel F, Soslow, Robert A, Ellenson, Lora H, Abu-Rustum, Nadeem R, Aghajanian, Carol, Friedman, Claire F, McPherson, Andrew, Weigelt, Britta, Zamarin, Dmitriy, Shah, Sohrab P
Published in Nature (London) (22.12.2022)
Published in Nature (London) (22.12.2022)
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Periodontal disease and the oral microbiota in new-onset rheumatoid arthritis
Scher, Jose U., Ubeda, Carles, Equinda, Michele, Khanin, Raya, Buischi, Yvonne, Viale, Agnes, Lipuma, Lauren, Attur, Mukundan, Pillinger, Michael H., Weissmann, Gerald, Littman, Dan R., Pamer, Eric G., Bretz, Walter A., Abramson, Steven B.
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.10.2012)
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.10.2012)
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Prognostic Relevance of Integrated Genetic Profiling in Acute Myeloid Leukemia
Patel, Jay P, Gönen, Mithat, Figueroa, Maria E, Fernandez, Hugo, Sun, Zhuoxin, Racevskis, Janis, Van Vlierberghe, Pieter, Dolgalev, Igor, Thomas, Sabrena, Aminova, Olga, Huberman, Kety, Cheng, Janice, Viale, Agnes, Socci, Nicholas D, Heguy, Adriana, Cherry, Athena, Vance, Gail, Higgins, Rodney R, Ketterling, Rhett P, Gallagher, Robert E, Litzow, Mark, van den Brink, Marcel R.M, Lazarus, Hillard M, Rowe, Jacob M, Luger, Selina, Ferrando, Adolfo, Paietta, Elisabeth, Tallman, Martin S, Melnick, Ari, Abdel-Wahab, Omar, Levine, Ross L
Published in The New England journal of medicine (22.03.2012)
Published in The New England journal of medicine (22.03.2012)
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Ibrutinib Unmasks Critical Role of Bruton Tyrosine Kinase in Primary CNS Lymphoma
Grommes, Christian, Pastore, Alessandro, Palaskas, Nicolaos, Tang, Sarah S, Campos, Carl, Schartz, Derrek, Codega, Paolo, Nichol, Donna, Clark, Owen, Hsieh, Wan-Ying, Rohle, Dan, Rosenblum, Marc, Viale, Agnes, Tabar, Viviane S, Brennan, Cameron W, Gavrilovic, Igor T, Kaley, Thomas J, Nolan, Craig P, Omuro, Antonio, Pentsova, Elena, Thomas, Alissa A, Tsyvkin, Elina, Noy, Ariela, Palomba, M Lia, Hamlin, Paul, Sauter, Craig S, Moskowitz, Craig H, Wolfe, Julia, Dogan, Ahmet, Won, Minhee, Glass, Jon, Peak, Scott, Lallana, Enrico C, Hatzoglou, Vaios, Reiner, Anne S, Gutin, Philip H, Huse, Jason T, Panageas, Katherine S, Graeber, Thomas G, Schultz, Nikolaus, DeAngelis, Lisa M, Mellinghoff, Ingo K
Published in Cancer discovery (01.09.2017)
Published in Cancer discovery (01.09.2017)
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Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans
Ubeda, Carles, Taur, Ying, Jenq, Robert R, Equinda, Michele J, Son, Tammy, Samstein, Miriam, Viale, Agnes, Socci, Nicholas D, van den Brink, Marcel R M, Kamboj, Mini, Pamer, Eric G
Published in The Journal of clinical investigation (01.12.2010)
Published in The Journal of clinical investigation (01.12.2010)
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Performance of Severe Acute Respiratory Syndrome Coronavirus 2 Real-Time RT-PCR Tests on Oral Rinses and Saliva Samples
Babady, N. Esther, McMillen, Tracy, Jani, Krupa, Viale, Agnes, Robilotti, Elizabeth V., Aslam, Anoshe, Diver, Maureen, Sokoli, Desiree, Mason, Greg, Shah, Monika K., Korenstein, Deborah, Kamboj, Mini
Published in The Journal of molecular diagnostics : JMD (01.01.2021)
Published in The Journal of molecular diagnostics : JMD (01.01.2021)
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Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions
Brannon, A Rose, Vakiani, Efsevia, Sylvester, Brooke E, Scott, Sasinya N, McDermott, Gregory, Shah, Ronak H, Kania, Krishan, Viale, Agnes, Oschwald, Dayna M, Vacic, Vladimir, Emde, Anne-Katrin, Cercek, Andrea, Yaeger, Rona, Kemeny, Nancy E, Saltz, Leonard B, Shia, Jinru, D'Angelica, Michael I, Weiser, Martin R, Solit, David B, Berger, Michael F
Published in Genome biology (28.08.2014)
Published in Genome biology (28.08.2014)
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