Genetic circuit design automation
Nielsen, Alec A. K., Der, Bryan S., Shin, Jonghyeon, Vaidyanathan, Prashant, Paralanov, Vanya, Strychalski, Elizabeth A., Ross, David, Densmore, Douglas, Voigt, Christopher A.
Published in Science (American Association for the Advancement of Science) (01.04.2016)
Published in Science (American Association for the Advancement of Science) (01.04.2016)
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Journal Article
Algorithms for the selection of fluorescent reporters
Vaidyanathan, Prashant, Appleton, Evan, Tran, David, Vahid, Alexander, Church, George, Densmore, Douglas
Published in Communications biology (26.01.2021)
Published in Communications biology (26.01.2021)
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Journal Article
The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering
McLaughlin, James Alastair, Beal, Jacob, Mısırlı, Göksel, Grünberg, Raik, Bartley, Bryan A, Scott-Brown, James, Vaidyanathan, Prashant, Fontanarrosa, Pedro, Oberortner, Ernst, Wipat, Anil, Gorochowski, Thomas E, Myers, Chris J
Published in Frontiers in bioengineering and biotechnology (11.09.2020)
Published in Frontiers in bioengineering and biotechnology (11.09.2020)
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Journal Article
Synthetic biology open language visual (SBOL visual) version 3.0
Baig, Hasan, Fontanarossa, Pedro, McLaughlin, James, Scott-Brown, James, Vaidyanathan, Prashant, Gorochowski, Thomas, Misirli, Goksel, Beal, Jacob, Myers, Chris
Published in Journal of integrative bioinformatics (20.10.2021)
Published in Journal of integrative bioinformatics (20.10.2021)
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Journal Article
Synthetic biology open language (SBOL) version 3.1.0
Buecherl, Lukas, Mitchell, Thomas, Scott-Brown, James, Vaidyanathan, Prashant, Vidal, Gonzalo, Baig, Hasan, Bartley, Bryan, Beal, Jacob, Crowther, Matthew, Fontanarrosa, Pedro, Gorochowski, Thomas, Grünberg, Raik, Kulkarni, Vishwesh, McLaughlin, James, Mısırlı, Göksel, Oberortner, Ernst, Wipat, Anil, Myers, Chris
Published in Journal of integrative bioinformatics (31.03.2023)
Published in Journal of integrative bioinformatics (31.03.2023)
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Journal Article
Synthetic biology open language (SBOL) version 3.0.0
Baig, Hasan, Fontanarrosa, Pedro, Kulkarni, Vishwesh, McLaughlin, James Alastair, Vaidyanathan, Prashant, Bartley, Bryan, Beal, Jacob, Crowther, Matthew, Gorochowski, Thomas E., Grünberg, Raik, Misirli, Goksel, Scott-Brown, James, Oberortner, Ernst, Wipat, Anil, Myers, Chris J.
Published in Journal of integrative bioinformatics (25.06.2020)
Published in Journal of integrative bioinformatics (25.06.2020)
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Journal Article
Synthetic biology open language visual (SBOL visual) version 2.2
Baig, Hasan, Fontanarrosa, Pedro, Kulkarni, Vishwesh, McLaughlin, James, Vaidyanathan, Prashant, Bartley, Bryan, Bhatia, Swapnil, Bhakta, Shyam, Bissell, Michael, Clancy, Kevin, Cox, Robert Sidney, Moreno, Angel Goñi, Gorochowski, Thomas, Grunberg, Raik, Luna, Augustin, Madsen, Curtis, Misirli, Goksel, Nguyen, Tramy, Le Novere, Nicolas, Palchick, Zachary, Pocock, Matthew, Roehner, Nicholas, Sauro, Herbert, Scott-Brown, James, Sexton, John T., Stan, Guy-Bart, Tabor, Jeffrey J., Vilar, Marta Vazquez, Voigt, Christopher A., Wipat, Anil, Zong, David, Zundel, Zach, Beal, Jacob, Myers, Chris
Published in Journal of integrative bioinformatics (10.06.2020)
Published in Journal of integrative bioinformatics (10.06.2020)
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Journal Article
Synthetic biology open language visual (SBOL Visual) version 2.3
Baig, Hasan, Fontanarossa, Pedro, Kulkarni, Vishwesh, McLaughlin, James, Vaidyanathan, Prashant, Bartley, Bryan, Bhakta, Shyam, Bhatia, Swapnil, Bissell, Mike, Clancy, Kevin, Cox, Robert Sidney, Goñi Moreno, Angel, Gorochowski, Thomas, Grunberg, Raik, Lee, Jihwan, Luna, Augustin, Madsen, Curtis, Misirli, Goksel, Nguyen, Tramy, Le Novere, Nicolas, Palchick, Zachary, Pocock, Matthew, Roehner, Nicholas, Sauro, Herbert, Scott-Brown, James, Sexton, John T., Stan, Guy-Bart, Tabor, Jeffrey J., Terry, Logan, Vazquez Vilar, Marta, Voigt, Christopher A., Wipat, Anil, Zong, David, Zundel, Zach, Beal, Jacob, Myers, Chris
Published in Journal of integrative bioinformatics (08.06.2021)
Published in Journal of integrative bioinformatics (08.06.2021)
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Journal Article
A Computational Workflow for the Automated Generation of Models of Genetic Designs
Misirli, Göksel, Nguyen, Tramy, McLaughlin, James Alastair, Vaidyanathan, Prashant, Jones, Timothy S, Densmore, Douglas, Myers, Chris, Wipat, Anil
Published in ACS synthetic biology (19.07.2019)
Published in ACS synthetic biology (19.07.2019)
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Journal Article
A Framework for Genetic Logic Synthesis
Vaidyanathan, Prashant, Der, Bryan S., Bhatia, Swapnil, Roehner, Nicholas, Silva, Ryan, Voigt, Christopher A., Densmore, Douglas
Published in Proceedings of the IEEE (01.11.2015)
Published in Proceedings of the IEEE (01.11.2015)
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Journal Article
Grid-based temporal logic inference
Vaidyanathan, Prashant, Ivison, Rachael, Bombara, Giuseppe, DeLateur, Nicholas A., Weiss, Ron, Densmore, Douglas, Belta, Calin
Published in 2017 IEEE 56th Annual Conference on Decision and Control (CDC) (01.12.2017)
Published in 2017 IEEE 56th Annual Conference on Decision and Control (CDC) (01.12.2017)
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Conference Proceeding
MIXED REALITY WORKFLOW GENERATION
DALCHAU, Neil, PANDA, Payod, OFEK, Eyal, RINTEL, Edward Sean Lloyd, VAIDYANATHAN, Prashant, GRANT, Paul Kerr
Year of Publication 06.06.2024
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Year of Publication 06.06.2024
Patent
MIXED REALITY WORKFLOW GENERATION
DALCHAU, Neil, PANDA, Payod, OFEK, Eyal, RINTEL, Edward Sean Lloyd, VAIDYANATHAN, Prashant, GRANT, Paul Kerr
Year of Publication 06.06.2024
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Year of Publication 06.06.2024
Patent
Metrics for Signal Temporal Logic Formulae
Madsen, Curtis, Vaidyanathan, Prashant, Sadraddini, Sadra, Vasile, Cristian-Ioan, DeLateur, Nicholas A., Weiss, Ron, Densmore, Douglas, Belta, Calin
Published in 2018 IEEE Conference on Decision and Control (CDC) (01.12.2018)
Published in 2018 IEEE Conference on Decision and Control (CDC) (01.12.2018)
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Conference Proceeding
Metrics for Signal Temporal Logic Formulae
Madsen, Curtis, Vaidyanathan, Prashant, Sadraddini, Sadra, Vasile, Cristian-Ioan, DeLateur, Nicholas A, Weiss, Ron, Densmore, Douglas, Belta, Calin
Year of Publication 01.08.2018
Year of Publication 01.08.2018
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Journal Article
Algorithms for the selection of fluorescent reporters
Vaidyanathan, Prashant, Appleton, Evan, Tran, David, Alexander, Vahid, Church, George, Densmore, Douglas
Published in bioRxiv (16.05.2020)
Published in bioRxiv (16.05.2020)
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Paper
Scalable dynamic characterization of synthetic gene circuits
Dalchau, Neil, Grant, Paul K, Vaidyanathan, Prashant, Spaccasassi, Carlo, Gravill, Colin, Phillips, Andrew
Published in bioRxiv (15.08.2019)
Published in bioRxiv (15.08.2019)
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Paper