A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex
Sabin, Susanna, Herbig, Alexander, Vågene, Åshild J., Ahlström, Torbjörn, Bozovic, Gracijela, Arcini, Caroline, Kühnert, Denise, Bos, Kirsten I.
Published in Genome Biology (10.08.2020)
Published in Genome Biology (10.08.2020)
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A 5700 year-old human genome and oral microbiome from chewed birch pitch
Jensen, Theis Z. T., Niemann, Jonas, Iversen, Katrine Højholt, Fotakis, Anna K., Gopalakrishnan, Shyam, Vågene, Åshild J., Pedersen, Mikkel Winther, Sinding, Mikkel-Holger S., Ellegaard, Martin R., Allentoft, Morten E., Lanigan, Liam T., Taurozzi, Alberto J., Nielsen, Sofie Holtsmark, Dee, Michael W., Mortensen, Martin N., Christensen, Mads C., Sørensen, Søren A., Collins, Matthew J., Gilbert, M. Thomas P., Sikora, Martin, Rasmussen, Simon, Schroeder, Hannes
Published in Nature communications (17.12.2019)
Published in Nature communications (17.12.2019)
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Journal Article
Geographically dispersed zoonotic tuberculosis in pre-contact South American human populations
Vågene, Åshild J., Honap, Tanvi P., Harkins, Kelly M., Rosenberg, Michael S., Giffin, Karen, Cárdenas-Arroyo, Felipe, Leguizamón, Laura Paloma, Arnett, Judith, Buikstra, Jane E., Herbig, Alexander, Krause, Johannes, Stone, Anne C., Bos, Kirsten I.
Published in Nature communications (07.03.2022)
Published in Nature communications (07.03.2022)
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Journal Article
Differential preservation of endogenous human and microbial DNA in dental calculus and dentin
Mann, Allison E., Sabin, Susanna, Ziesemer, Kirsten, Vågene, Åshild J., Schroeder, Hannes, Ozga, Andrew T., Sankaranarayanan, Krithivasan, Hofman, Courtney A., Fellows Yates, James A., Salazar-García, Domingo C., Frohlich, Bruno, Aldenderfer, Mark, Hoogland, Menno, Read, Christopher, Milner, George R., Stone, Anne C., Lewis, Cecil M., Krause, Johannes, Hofman, Corinne, Bos, Kirsten I., Warinner, Christina
Published in Scientific reports (29.06.2018)
Published in Scientific reports (29.06.2018)
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Journal Article
Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus
Fotakis, Anna K., Denham, Sean D., Mackie, Meaghan, Orbegozo, Miren Iraeta, Mylopotamitaki, Dorothea, Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper V., Cappellini, Enrico, Zhang, Guojie, Christophersen, Axel, Gilbert, M. Thomas P., Vågene, Åshild J.
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (23.11.2020)
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (23.11.2020)
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Journal Article
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico
Vågene, Åshild J., Herbig, Alexander, Campana, Michael G., Robles García, Nelly M., Warinner, Christina, Sabin, Susanna, Spyrou, Maria A., Andrades Valtueña, Aida, Huson, Daniel, Tuross, Noreen, Bos, Kirsten I., Krause, Johannes
Published in Nature ecology & evolution (01.03.2018)
Published in Nature ecology & evolution (01.03.2018)
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Journal Article
Parallel detection of ancient pathogens via array-based DNA capture
Bos, Kirsten I., Jäger, Günter, Schuenemann, Verena J., Vågene, Åshild J., Spyrou, Maria A., Herbig, Alexander, Nieselt, Kay, Krause, Johannes
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.01.2015)
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.01.2015)
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Journal Article
Population resequencing of European mitochondrial genomes highlights sex-bias in Bronze Age demographic expansions
Batini, Chiara, Hallast, Pille, Vågene, Åshild J., Zadik, Daniel, Eriksen, Heidi A., Pamjav, Horolma, Sajantila, Antti, Wetton, Jon H., Jobling, Mark A.
Published in Scientific reports (21.09.2017)
Published in Scientific reports (21.09.2017)
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The origin and legacy of the Etruscans through a 2000-year archeogenomic time transect
Posth, Cosimo, Zaro, Valentina, Spyrou, Maria A, Vai, Stefania, Gnecchi-Ruscone, Guido A, Modi, Alessandra, Peltzer, Alexander, Mötsch, Angela, Nägele, Kathrin, Vågene, Åshild J, Nelson, Elizabeth A, Radzevičiūtė, Rita, Freund, Cäcilia, Bondioli, Lorenzo M, Cappuccini, Luca, Frenzel, Hannah, Pacciani, Elsa, Boschin, Francesco, Capecchi, Giulia, Martini, Ivan, Moroni, Adriana, Ricci, Stefano, Sperduti, Alessandra, Turchetti, Maria Angela, Riga, Alessandro, Zavattaro, Monica, Zifferero, Andrea, Heyne, Henrike O, Fernández-Domínguez, Eva, Kroonen, Guus J, McCormick, Michael, Haak, Wolfgang, Lari, Martina, Barbujani, Guido, Bondioli, Luca, Bos, Kirsten I, Caramelli, David, Krause, Johannes
Published in Science advances (24.09.2021)
Published in Science advances (24.09.2021)
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Journal Article
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process
Key, Felix M., Posth, Cosimo, Esquivel-Gomez, Luis R., Hübler, Ron, Spyrou, Maria A., Neumann, Gunnar U., Furtwängler, Anja, Sabin, Susanna, Burri, Marta, Wissgott, Antje, Lankapalli, Aditya Kumar, Vågene, Åshild J., Meyer, Matthias, Nagel, Sarah, Tukhbatova, Rezeda, Khokhlov, Aleksandr, Chizhevsky, Andrey, Hansen, Svend, Belinsky, Andrey B., Kalmykov, Alexey, Kantorovich, Anatoly R., Maslov, Vladimir E., Stockhammer, Philipp W., Vai, Stefania, Zavattaro, Monica, Riga, Alessandro, Caramelli, David, Skeates, Robin, Beckett, Jessica, Gradoli, Maria Giuseppina, Steuri, Noah, Hafner, Albert, Ramstein, Marianne, Siebke, Inga, Lösch, Sandra, Erdal, Yilmaz Selim, Alikhan, Nabil-Fareed, Zhou, Zhemin, Achtman, Mark, Bos, Kirsten, Reinhold, Sabine, Haak, Wolfgang, Kühnert, Denise, Herbig, Alexander, Krause, Johannes
Published in Nature ecology & evolution (01.03.2020)
Published in Nature ecology & evolution (01.03.2020)
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Journal Article
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir
Fellows Yates, James A., Andrades Valtueña, Aida, Vågene, Åshild J., Cribdon, Becky, Velsko, Irina M., Borry, Maxime, Bravo-Lopez, Miriam J., Fernandez-Guerra, Antonio, Green, Eleanor J., Ramachandran, Shreya L., Heintzman, Peter D., Spyrou, Maria A., Hübner, Alexander, Gancz, Abigail S., Hider, Jessica, Allshouse, Aurora F., Zaro, Valentina, Warinner, Christina
Published in Scientific data (26.01.2021)
Published in Scientific data (26.01.2021)
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Journal Article
Ancient Metagenomic Studies: Considerations for the Wider Scientific Community
Der Sarkissian, Clio, Velsko, Irina M, Fotakis, Anna K, Vågene, Åshild J, Hübner, Alexander, Fellows Yates, James A
Published in mSystems (21.12.2021)
Published in mSystems (21.12.2021)
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Journal Article
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT [version 2; peer review: 1 approved, 3 approved with reservations]
Borry, Maxime, Forsythe, Adrian, Andrades Valtueña, Aida, Hübner, Alexander, Ibrahim, Anan, Quagliariello, Andrea, White, Anna E., Kocher, Arthur, Vågene, Åshild J., Bartholdy, Bjørn Peare, Spurīte, Diāna, Ponce-Soto, Gabriel Yaxal, Neumann, Gunnar, Huang, I-Ting, Light, Ian, Velsko, Irina M., Jackson, Iseult, Frangenberg, Jasmin, Serrano, Javier G., Fumey, Julien, Özdoğan, Kadir T., Blevins, Kelly E., Daly, Kevin G., Lopopolo, Maria, Moraitou, Markella, Michel, Megan, van Os, Meriam, Bravo-Lopez, Miriam J., Sarhan, Mohamed S., Dagtas, Nihan D., Oskolkov, Nikolay, Smith, Olivia S., Lebrasseur, Ophélie, Rozwalak, Piotr, Eisenhofer, Raphael, Wasef, Sally, Ramachandran, Shreya L., Vanghi, Valentina, Warinner, Christina, Fellows Yates, James A.
Published in F1000 research (01.01.2023)
Published in F1000 research (01.01.2023)
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Journal Article
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT [version 1; peer review: 1 approved, 1 approved with reservations]
Borry, Maxime, Forsythe, Adrian, Andrades Valtueña, Aida, Hübner, Alexander, Ibrahim, Anan, Quagliariello, Andrea, White, Anna E., Kocher, Arthur, Vågene, Åshild J., Bartholdy, Bjørn Peare, Spurīte, Diāna, Ponce-Soto, Gabriel Yaxal, Neumann, Gunnar, Huang, I-Ting, Light, Ian, Velsko, Irina M., Jackson, Iseult, Frangenberg, Jasmin, Serrano, Javier G., Fumey, Julien, Özdoğan, Kadir T., Blevins, Kelly E., Daly, Kevin G., Lopopolo, Maria, Moraitou, Markella, Michel, Megan, van Os, Meriam, Bravo-Lopez, Miriam J., Sarhan, Mohamed S., Dagtas, Nihan D., Oskolkov, Nikolay, Smith, Olivia S., Lebrasseur, Ophélie, Rozwalak, Piotr, Eisenhofer, Raphael, Wasef, Sally, Ramachandran, Shreya L., Vanghi, Valentina, Warinner, Christina, Fellows Yates, James A.
Published in F1000 research (2023)
Published in F1000 research (2023)
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Journal Article
The Anglo-Saxon migration and the formation of the early English gene pool
Gretzinger, Joscha, Sayer, Duncan, Justeau, Pierre, Altena, Eveline, Pala, Maria, Dulias, Katharina, Edwards, Ceiridwen J., Jodoin, Susanne, Lacher, Laura, Sabin, Susanna, Vågene, Åshild J., Haak, Wolfgang, Ebenesersdóttir, S. Sunna, Moore, Kristjan H. S., Radzeviciute, Rita, Schmidt, Kara, Brace, Selina, Bager, Martina Abenhus, Patterson, Nick, Papac, Luka, Broomandkhoshbacht, Nasreen, Callan, Kimberly, Harney, Éadaoin, Iliev, Lora, Lawson, Ann Marie, Michel, Megan, Stewardson, Kristin, Zalzala, Fatma, Rohland, Nadin, Kappelhoff-Beckmann, Stefanie, Both, Frank, Winger, Daniel, Neumann, Daniel, Saalow, Lars, Krabath, Stefan, Beckett, Sophie, Van Twest, Melanie, Faulkner, Neil, Read, Chris, Barton, Tabatha, Caruth, Joanna, Hines, John, Krause-Kyora, Ben, Warnke, Ursula, Schuenemann, Verena J., Barnes, Ian, Dahlström, Hanna, Clausen, Jane Jark, Richardson, Andrew, Popescu, Elizabeth, Dodwell, Natasha, Ladd, Stuart, Phillips, Tom, Mortimer, Richard, Sayer, Faye, Swales, Diana, Stewart, Allison, Powlesland, Dominic, Kenyon, Robert, Ladle, Lilian, Peek, Christina, Grefen-Peters, Silke, Ponce, Paola, Daniels, Robin, Spall, Cecily, Woolcock, Jennifer, Jones, Andy M., Roberts, Amy V., Symmons, Robert, Rawden, Anooshka C., Cooper, Alan, Bos, Kirsten I., Booth, Tom, Schroeder, Hannes, Thomas, Mark G., Helgason, Agnar, Richards, Martin B., Reich, David, Krause, Johannes, Schiffels, Stephan
Published in Nature (London) (06.10.2022)
Published in Nature (London) (06.10.2022)
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Journal Article
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex
Sabin, Susanna, Herbig, Alexander, Vågene, Åshild J, Ahlström, Torbjörn, Bozovic, Gracijela, Arcini, Caroline, Kühnert, Denise, Bos, Kirsten I
Published in bioRxiv (25.03.2019)
Published in bioRxiv (25.03.2019)
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Corroborating written history with ancient DNA: The case of the Well-man described in an Old Norse saga
Ellegaard, Martin R., Ebenesersdóttir, S. Sunna, Moore, Kristjan H.S., Petersén, Anna, Vågene, Åshild J., Bieker, Vanessa C., Denham, Sean D., Cavalleri, Gianpiero L., Gilbert, Edmund, Werge, Thomas, Hansen, Thomas F., Kockum, Ingrid, Alfredsson, Lars, Olsson, Tomas, Hovig, Eivind, Gilbert, M. Thomas P., Stefánsson, Kári, Stenøien, Hans K., Helgason, Agnar, Martin, Michael D.
Published in iScience (01.10.2024)
Published in iScience (01.10.2024)
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Journal Article
Parallel detection of ancient pathogens via array-based DNA capture
Bos, Kirsten I., Jäger, Günter, Schuenemann, Verena J., Vågene, Åshild J., Spyrou, Maria A., Herbig, Alexander, Nieselt, Kay, Krause, Johannes
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.01.2015)
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Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.01.2015)
Journal Article
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir
Fellows Yates, James A, Valtueña, Aida Andrades, Vågene, Ashild J, Cribdon, Becky, Velsko, Irina M, Borry, Maxime, Bravo-López, Miriam J, Fernandez-Guerra, Antonio, Green, Eleanor J, Ramachandran, Shreya L, Heintzman, Peter D, Spyrou, Maria A, Hübner, Alexander, Gancz, Abigail S, Hider, Jessica, Allshouse, Aurora F, Warinner, Christina
Published in bioRxiv (03.09.2020)
Published in bioRxiv (03.09.2020)
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Paper
Salmonella enterica genomes recovered from victims of a major 16th century epidemic in Mexico
shild J V gene, Campana, Michael G, Nelly M Robles Garc a, Warinner, Christina, Spyrou, Maria A, Aida Andrades Valtue a, Huson, Daniel, Tuross, Noreen, Herbig, Alexander, Bos, Kirsten I, Krause, Johannes
Published in bioRxiv (08.02.2017)
Published in bioRxiv (08.02.2017)
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