Martini Coarse-Grained Force Field: Extension to RNA
Uusitalo, Jaakko J., Ingólfsson, Helgi I., Marrink, Siewert J., Faustino, Ignacio
Published in Biophysical journal (25.07.2017)
Published in Biophysical journal (25.07.2017)
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Martini Coarse-Grained Force Field: Extension to DNA
Uusitalo, Jaakko J, Ingólfsson, Helgi I, Akhshi, Parisa, Tieleman, D. Peter, Marrink, Siewert J
Published in Journal of chemical theory and computation (11.08.2015)
Published in Journal of chemical theory and computation (11.08.2015)
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The power of coarse graining in biomolecular simulations
Ingólfsson, Helgi I., Lopez, Cesar A., Uusitalo, Jaakko J., de Jong, Djurre H., Gopal, Srinivasa M., Periole, Xavier, Marrink, Siewert J.
Published in Wiley interdisciplinary reviews. Computational molecular science (01.05.2014)
Published in Wiley interdisciplinary reviews. Computational molecular science (01.05.2014)
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Stability and dynamics of membrane-spanning DNA nanopores
Maingi, Vishal, Burns, Jonathan R., Uusitalo, Jaakko J., Howorka, Stefan, Marrink, Siewert J., Sansom, Mark S. P.
Published in Nature communications (20.03.2017)
Published in Nature communications (20.03.2017)
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Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, Claire E, Branco Dos Santos, Filipe, Hesseling, Anne, Uusitalo, Jaakko J, Bachmann, Herwig, Benavente, Vera, Goel, Anisha, Berkhout, Jan, Bruggeman, Frank J, Marrink, Siewert-Jan, Montalban-Lopez, Manolo, de Jong, Anne, Kok, Jan, Molenaar, Douwe, Poolman, Bert, Teusink, Bas, Kuipers, Oscar P
Published in BMC ecology and evolution (10.01.2019)
Published in BMC ecology and evolution (10.01.2019)
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Bulk Heterojunction Morphologies with Atomistic Resolution from Coarse-Grain Solvent Evaporation Simulations
Alessandri, Riccardo, Uusitalo, Jaakko J, de Vries, Alex H, Havenith, Remco W. A, Marrink, Siewert J
Published in Journal of the American Chemical Society (15.03.2017)
Published in Journal of the American Chemical Society (15.03.2017)
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Dry Martini, a Coarse-Grained Force Field for Lipid Membrane Simulations with Implicit Solvent
Arnarez, Clément, Uusitalo, Jaakko J, Masman, Marcelo F, Ingólfsson, Helgi I, de Jong, Djurre H, Melo, Manuel N, Periole, Xavier, de Vries, Alex H, Marrink, Siewert J
Published in Journal of chemical theory and computation (13.01.2015)
Published in Journal of chemical theory and computation (13.01.2015)
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Intramolecular photostabilization via triplet-state quenching: design principles to make organic fluorophores "self-healing"
van der Velde, Jasper H M, Uusitalo, Jaakko J, Ugen, Lourens-Jan, Warszawik, Eliza M, Herrmann, Andreas, Marrink, Siewert J, Cordes, Thorben
Published in Faraday discussions (01.01.2015)
Published in Faraday discussions (01.01.2015)
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Martini Coarse-Grained Force Field for RNA
Uusitalo, Jaakko J., Ingólfsson, Helgi I., Marrink, Siewert J., Faustino, Ignacio
Published in Biophysical journal (02.02.2018)
Published in Biophysical journal (02.02.2018)
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DNA-Origami Nanotubes and their Interaction with Membranes: Insights through Multiscale Molecular Dynamics Simulations
Maingi, Vishal, Uusitalo, Jaakko J., Lelimousin, Mickaël, Howorka, Stefan, Marrink, Siewert J., Sansom, Mark S.P.
Published in Biophysical journal (16.02.2016)
Published in Biophysical journal (16.02.2016)
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Journal Article
Covering All the Bases: A Martini Coarse-Grained Force Field for DNA
Uusitalo, Jaakko J., Ingólfsson, Helgi I., Marrink, Siewert-Jan
Published in Biophysical journal (29.01.2013)
Published in Biophysical journal (29.01.2013)
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Intramolecular photostabilization via triplet-state quenching: design principles to make organic fluorophores "self-healing"Electronic supplementary information (ESI) available: Additional single-molecule and simulation data. See DOI: 10.1039/c5fd00114e
van der Velde, Jasper H. M, Uusitalo, Jaakko J, Ugen, Lourens-Jan, Warszawik, Eliza M, Herrmann, Andreas, Marrink, Siewert J, Cordes, Thorben
Year of Publication 12.12.2015
Year of Publication 12.12.2015
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