An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
Pokusaeva, Victoria O, Usmanova, Dinara R, Putintseva, Ekaterina V, Espinar, Lorena, Sarkisyan, Karen S, Mishin, Alexander S, Bogatyreva, Natalya S, Ivankov, Dmitry N, Akopyan, Arseniy V, Avvakumov, Sergey Ya, Povolotskaya, Inna S, Filion, Guillaume J, Carey, Lucas B, Kondrashov, Fyodor A
Published in PLoS genetics (10.04.2019)
Published in PLoS genetics (10.04.2019)
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Journal Article
Local fitness landscape of the green fluorescent protein
Sarkisyan, Karen S, Bolotin, Dmitry A, Meer, Margarita V, Usmanova, Dinara R, Mishin, Alexander S, Sharonov, George V, Ivankov, Dmitry N, Bozhanova, Nina G, Baranov, Mikhail S, Soylemez, Onuralp, Bogatyreva, Natalya S, Vlasov, Peter K, Egorov, Evgeny S, Logacheva, Maria D, Kondrashov, Alexey S, Chudakov, Dmitry M, Putintseva, Ekaterina V, Mamedov, Ilgar Z, Tawfik, Dan S, Lukyanov, Konstantin A, Kondrashov, Fyodor A
Published in Nature (London) (19.05.2016)
Published in Nature (London) (19.05.2016)
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Journal Article
Molecular function limits divergent protein evolution on planetary timescales
Konaté, Mariam M, Plata, Germán, Park, Jimin, Usmanova, Dinara R, Wang, Harris, Vitkup, Dennis
Published in eLife (18.09.2019)
Published in eLife (18.09.2019)
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Journal Article
Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation
Usmanova, Dinara R, Bogatyreva, Natalya S, Ariño Bernad, Joan, Eremina, Aleksandra A, Gorshkova, Anastasiya A, Kanevskiy, German M, Lonishin, Lyubov R, Meister, Alexander V, Yakupova, Alisa G, Kondrashov, Fyodor A, Ivankov, Dmitry N
Published in Bioinformatics (01.11.2018)
Published in Bioinformatics (01.11.2018)
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Journal Article
Machine Learning: How Much Does It Tell about Protein Folding Rates?
Corrales, Marc, Cuscó, Pol, Usmanova, Dinara R, Chen, Heng-Chang, Bogatyreva, Natalya S, Filion, Guillaume J, Ivankov, Dmitry N
Published in PloS one (25.11.2015)
Published in PloS one (25.11.2015)
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Journal Article
NMR-based approach to measure the free energy of transmembrane helix–helix interactions
Mineev, Konstantin S., Lesovoy, Dmitry M., Usmanova, Dinara R., Goncharuk, Sergey A., Shulepko, Mikhail A., Lyukmanova, Ekaterina N., Kirpichnikov, Mikhail P., Bocharov, Eduard V., Arseniev, Alexander S.
Published in Biochimica et biophysica acta (01.01.2014)
Published in Biochimica et biophysica acta (01.01.2014)
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Journal Article
Structural Similarity between Defense Peptide from Wheat and Scorpion Neurotoxin Permits Rational Functional Design
Berkut, Antonina A., Usmanova, Dinara R., Peigneur, Steve, Oparin, Peter B., Mineev, Konstantin S., Odintsova, Tatyana I., Tytgat, Jan, Arseniev, Alexander S., Grishin, Eugene V., Vassilevski, Alexander A.
Published in The Journal of biological chemistry (16.05.2014)
Published in The Journal of biological chemistry (16.05.2014)
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Journal Article
Structural and Functional Characterization of Alternative Transmembrane Domain Conformations in VEGF Receptor 2 Activation
Manni, Sandro, Mineev, Konstantin S., Usmanova, Dinara, Lyukmanova, Ekaterina N., Shulepko, Mikhail A., Kirpichnikov, Mikhail P., Winter, Jonas, Matkovic, Milos, Deupi, Xavier, Arseniev, Alexander S., Ballmer-Hofer, Kurt
Published in Structure (London) (05.08.2014)
Published in Structure (London) (05.08.2014)
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Journal Article
Experimental assay of a fitness landscape on a macroevolutionary scale
Pokusaeva, Victoria, Usmanova, Dinara, Putintseva, Ekaterina, Espinar, Lorena, Sarkisyan, Karen, Mishin, Alexander, Bogatyreva, Natalya, Ivankov, Dmitry, Filion, Guillaume, Lucas, Carey, Kondrashov, Fyodor Alexeevich
Published in bioRxiv (06.04.2018)
Published in bioRxiv (06.04.2018)
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