Distributed computing for macromolecular crystallography
Krissinel, Evgeny, Uski, Ville, Lebedev, Andrey, Winn, Martyn, Ballard, Charles
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2018)
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SIMBAD: a sequence‐independent molecular‐replacement pipeline
Simpkin, Adam J., Simkovic, Felix, Thomas, Jens M. H., Savko, Martin, Lebedev, Andrey, Uski, Ville, Ballard, Charles, Wojdyr, Marcin, Wu, Rui, Sanishvili, Ruslan, Xu, Yibin, Lisa, María-Natalia, Buschiazzo, Alejandro, Shepard, William, Rigden, Daniel J., Keegan, Ronan M.
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2018)
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Aerosol size distribution measurements at four Nordic field stations: identification, analysis and trajectory analysis of new particle formation bursts
Maso, Miikka Dal, Sogacheva, Larisa, Aalto, Pasi P., Riipinen, Ilona, Komppula, Mika, Tunved, Peter, Korhonen, Laura, Suur-Uski, Ville, Hirsikko, Anne, KurtéN, Theo, Kerminen, Veli-Matti, Lihavainen, Heikki, Viisanen, Yrö, Hansson, Hans-Christen, Kulmala, Markku
Published in Tellus. Series B, Chemical and physical meteorology (01.07.2007)
Published in Tellus. Series B, Chemical and physical meteorology (01.07.2007)
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Conference Proceeding
CCP4i2: the new graphical user interface to the CCP4 program suite
Potterton, Liz, Agirre, Jon, Ballard, Charles, Cowtan, Kevin, Dodson, Eleanor, Evans, Phil R., Jenkins, Huw T., Keegan, Ronan, Krissinel, Eugene, Stevenson, Kyle, Lebedev, Andrey, McNicholas, Stuart J., Nicholls, Robert A., Noble, Martin, Pannu, Navraj S., Roth, Christian, Sheldrick, George, Skubak, Pavol, Turkenburg, Johan, Uski, Ville, von Delft, Frank, Waterman, David, Wilson, Keith, Winn, Martyn, Wojdyr, Marcin
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2018)
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Journal Article
Solving macromolecular structures online with CCP4
Uski, Ville, Krissinel, Eugene, Ballard, Charles, Lebedev, Andrey, Keegan, Ronan
Published in Acta crystallographica. Section A, Foundations and advances (14.08.2021)
Published in Acta crystallographica. Section A, Foundations and advances (14.08.2021)
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CCP4 web services and cloud computing developments
Uski, Ville, Krissinel, Eugene, Ballard, Charles
Published in Acta crystallographica. Section A, Foundations and advances (26.05.2017)
Published in Acta crystallographica. Section A, Foundations and advances (26.05.2017)
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ConPlot: web-based application for the visualization of protein contact maps integrated with other data
Sánchez Rodríguez, Filomeno, Mesdaghi, Shahram, Simpkin, Adam J., Burgos-Mármol, J. Javier, Murphy, David L., Uski, Ville, Keegan, Ronan M., Rigden, Daniel J.
Published in Bioinformatics (Oxford, England) (01.09.2021)
Published in Bioinformatics (Oxford, England) (01.09.2021)
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Predicted models and CCP4
Simpkin, Adam J., Caballero, Iracema, McNicholas, Stuart, Stevenson, Kyle, Jiménez, Elisabet, Sánchez Rodríguez, Filomeno, Fando, Maria, Uski, Ville, Ballard, Charles, Chojnowski, Grzegorz, Lebedev, Andrey, Krissinel, Eugene, Usón, Isabel, Rigden, Daniel J., Keegan, Ronan M.
Published in Acta crystallographica. Section D, Biological crystallography. (01.09.2023)
Published in Acta crystallographica. Section D, Biological crystallography. (01.09.2023)
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AC transport at holographic quantum Hall transitions
Alanen, Janne, Keski-Vakkuri, Esko, Kraus, Per, Suur-Uski, Ville
Published in The journal of high energy physics (01.11.2009)
Published in The journal of high energy physics (01.11.2009)
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Molecular replacement model preparation and its automation in MoRDa and MrBUMP
Lebedev, Andrey, Vagin, Alexy, McNicholas, Stuart, Thomas, Jens, Uski, Ville, Rigden, Daniel, Keegan, Ronan
Published in Acta crystallographica. Section A, Foundations and advances (18.08.2019)
Published in Acta crystallographica. Section A, Foundations and advances (18.08.2019)
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CCP4 Cloud for structure determination and project management in macromolecular crystallography
Krissinel, Eugene, Lebedev, Andrey A., Uski, Ville, Ballard, Charles B., Keegan, Ronan M., Kovalevskiy, Oleg, Nicholls, Robert A., Pannu, Navraj S., Skubák, Pavol, Berrisford, John, Fando, Maria, Lohkamp, Bernhard, Wojdyr, Marcin, Simpkin, Adam J., Thomas, Jens M. H., Oliver, Christopher, Vonrhein, Clemens, Chojnowski, Grzegorz, Basle, Arnaud, Purkiss, Andrew, Isupov, Michail N., McNicholas, Stuart, Lowe, Edward, Triviño, Josep, Cowtan, Kevin, Agirre, Jon, Rigden, Daniel J., Uson, Isabel, Lamzin, Victor, Tews, Ivo, Bricogne, Gerard, Leslie, Andrew G. W., Brown, David G.
Published in Acta crystallographica. Section D, Biological crystallography. (01.09.2022)
Published in Acta crystallographica. Section D, Biological crystallography. (01.09.2022)
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Journal Article
ConPlot: web-based application for the visualization of protein contact maps integrated with other data
Sánchez Rodríguez, Filomeno, Mesdaghi, Shahram, Simpkin, Adam J., Burgos-Mármol, J. Javier, Murphy, David L., Uski, Ville, Keegan, Ronan M., Rigden, Daniel J.
Published in Bioinformatics (Oxford, England) (09.09.2021)
Published in Bioinformatics (Oxford, England) (09.09.2021)
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Journal Article
Recent developments in MrBUMP: better search‐model preparation, graphical interaction with search models, and solution improvement and assessment
Keegan, Ronan M., McNicholas, Stuart J., Thomas, Jens M. H., Simpkin, Adam J., Simkovic, Felix, Uski, Ville, Ballard, Charles C., Winn, Martyn D., Wilson, Keith S., Rigden, Daniel J.
Published in Acta crystallographica. Section D, Biological crystallography. (01.03.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.03.2018)
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Using Phaser and ensembles to improve the performance of SIMBAD
Simpkin, Adam J., Simkovic, Felix, Thomas, Jens M. H., Savko, Martin, Lebedev, Andrey, Uski, Ville, Ballard, Charles C., Wojdyr, Marcin, Shepard, William, Rigden, Daniel J., Keegan, Ronan M.
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2020)
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2020)
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Journal Article
SIMBAD : structure-based search model identification for molecular replacement using the PDB
Simpkin, Adam, Simkovic, Felix, Thomas, Jens, Savko, Martin, Lebedev, Andrey, Uski, Ville, Wojdyr, Marcin, Ballard, Charles, Shepard, William, Rigden, Daniel, Keegan, Ronan
Published in Acta crystallographica. Section A, Foundations and advances (18.08.2019)
Published in Acta crystallographica. Section A, Foundations and advances (18.08.2019)
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Journal Article
CCP4 Cloud for distributed crystallographic computations
Krissinel, Eugene, Lebedev, Andrey, Uski, Ville, Ballard, Charles, Keegan, Ronan, Nicholls, Robert, Kovalevskiy, Oleg, Berrisford, John, Wojdyr, Marcin, Simpkin, Adam, Thomas, Jens, Oliver, Christopher, Pannu, Navraj, Skubak, Pavol
Published in Acta crystallographica. Section A, Foundations and advances (18.08.2019)
Published in Acta crystallographica. Section A, Foundations and advances (18.08.2019)
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