Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Bickhart, Derek M., Kolmogorov, Mikhail, Tseng, Elizabeth, Portik, Daniel M., Korobeynikov, Anton, Tolstoganov, Ivan, Uritskiy, Gherman, Liachko, Ivan, Sullivan, Shawn T., Shin, Sung Bong, Zorea, Alvah, Andreu, Victòria Pascal, Panke-Buisse, Kevin, Medema, Marnix H., Mizrahi, Itzhak, Pevzner, Pavel A., Smith, Timothy P. L.
Published in Nature biotechnology (01.05.2022)
Published in Nature biotechnology (01.05.2022)
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Journal Article
Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert
Uritskiy, Gherman, Getsin, Samantha, Munn, Adam, Gomez-Silva, Benito, Davila, Alfonso, Glass, Brian, Taylor, James, DiRuggiero, Jocelyne
Published in The ISME Journal (01.11.2019)
Published in The ISME Journal (01.11.2019)
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Journal Article
Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community
Uritskiy, Gherman, Tisza, Michael J., Gelsinger, Diego R., Munn, Adam, Taylor, James, DiRuggiero, Jocelyne
Published in Environmental microbiology (01.07.2021)
Published in Environmental microbiology (01.07.2021)
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Journal Article
A remarkable genetic shift in a transmitted/founder virus broadens antibody responses against HIV-1
Jain, Swati, Uritskiy, Gherman, Mahalingam, Marthandan, Batra, Himanshu, Chand, Subhash, Trinh, Hung V, Beck, Charles, Shin, Woong-Hee, Alsalmi, Wadad, Kijak, Gustavo, Eller, Leigh A, Kim, Jerome, Kihara, Daisuke, Tovanabutra, Sodsai, Ferrari, Guido, Robb, Merlin L, Rao, Mangala, Rao, Venigalla B
Published in eLife (15.04.2024)
Published in eLife (15.04.2024)
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Journal Article
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Bickhart, Derek M., Kolmogorov, Mikhail, Tseng, Elizabeth, Portik, Daniel M., Korobeynikov, Anton, Tolstoganov, Ivan, Uritskiy, Gherman, Liachko, Ivan, Sullivan, Shawn T., Shin, Sung Bong, Zorea, Alvah, Andreu, Victòria Pascal, Panke-Buisse, Kevin, Medema, Marnix H., Mizrahi, Itzhak, Pevzner, Pavel A., Smith, Timothy P. L.
Published in Nature biotechnology (01.05.2022)
Published in Nature biotechnology (01.05.2022)
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Journal Article
Environmental factors driving spatial heterogeneity in desert halophile microbial communities
Uritskiy, Gherman, Munn, Adam, Dailey, Micah, Gelsinger, Diego R., Getsin, Samantha, Davila, Alfonso, McCullough, P. R., Taylor, James, DiRuggiero, Jocelyne
Published in Frontiers in microbiology (20.10.2020)
Published in Frontiers in microbiology (20.10.2020)
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Journal Article
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community
Gelsinger, Diego R, Uritskiy, Gherman, Reddy, Rahul, Munn, Adam, Farney, Katie, DiRuggiero, Jocelyne
Published in mSystems (04.02.2020)
Published in mSystems (04.02.2020)
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Journal Article
Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019
Sakowski, Eric, Uritskiy, Gherman, Cooper, Rachel, Gomes, Maya, McLaren, Michael R., Meisel, Jacquelyn S., Mickol, Rebecca L., Mintz, C. David, Mongodin, Emmanuel F., Pop, Mihai, Rahman, Mohammad Arifur, Sanchez, Alvaro, Timp, Winston, Vela, Jeseth Delgado, Wolz, Carly Muletz, Zackular, Joseph P., Chopyk, Jessica, Commichaux, Seth, Davis, Meghan, Dluzen, Douglas, Ganesan, Sukirth M., Haruna, Muyideen, Nasko, Dan, Regan, Mary J., Sarria, Saul, Shah, Nidhi, Stacy, Brook, Taylor, Dylan, DiRuggiero, Jocelyne, Preheim, Sarah P.
Published in mSystems (08.10.2019)
Published in mSystems (08.10.2019)
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Journal Article
Correction: Trinh, H.V., et al. Humoral Response to the HIV-1 Envelope V2 Region in a Thai Early Acute Infection Cohort. Cells 2019, 8 , 365
Trinh, Hung V, Gohain, Neelakshi, Pham, Peter T, Hamlin, Christopher, Song, Hongshuo, Sanders-Buell, Eric, Bose, Meera, Eller, Leigh A, Jain, Swati, Uritskiy, Gherman, Rao, Venigalla B, Tovanabutra, Sodsai, Michael, Nelson L, Robb, Merlin L, Joyce, M Gordon, Rao, Mangala
Published in Cells (Basel, Switzerland) (06.06.2019)
Published in Cells (Basel, Switzerland) (06.06.2019)
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Journal Article
Stress responses of microbial communities from hypersaline environments
Uritskiy, Gherman, Gelsinger, Diego, Munn, Adam, Getsin, Samantha, DiRuggiero, Jocelyne
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
A remarkable genetic shift in a transmitted/founder virus broadens antibody responses against HIV-1
Jain, Swati, Uritskiy, Gherman, Mahalingam, Marthandan, Batra, Himanshu, Chand, Subhash, Trinh, Hung V, Beck, Charles, Shin, Woong-Hee, Alsalmi, Wadad, Kijak, Gustavo, Eller, Leigh A, Kim, Jerome, Kihara, Daisuke, Tovanabutra, Sodsai, Ferrari, Guido, Robb, Merlin L, Rao, Mangala, Rao, Venigalla B
Published in eLife (15.04.2024)
Published in eLife (15.04.2024)
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Journal Article
Glycosylation and oligomeric state of envelope protein might influence HIV-1 virion capture by α4β7 integrin
Chand, Subhash, Messina, Emily L, AlSalmi, Wadad, Ananthaswamy, Neeti, Gao, Guofen, Uritskiy, Gherman, Padilla-Sanchez, Victor, Mahalingam, Marthandan, Peachman, Kristina K, Robb, Merlin L, Rao, Mangala, Rao, Venigalla B
Published in Virology (New York, N.Y.) (01.08.2017)
Published in Virology (New York, N.Y.) (01.08.2017)
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Journal Article
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community
Diego R. Gelsinger, Gherman Uritskiy, Rahul Reddy, Adam Munn, Katie Farney, Jocelyne DiRuggiero
Published in mSystems (01.02.2020)
Published in mSystems (01.02.2020)
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Journal Article
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018
Meisel, Jacquelyn S, Nasko, Daniel J, Brubach, Brian, Cepeda-Espinoza, Victoria, Chopyk, Jessica, Corrada-Bravo, Héctor, Fedarko, Marcus, Ghurye, Jay, Javkar, Kiran, Olson, Nathan D, Shah, Nidhi, Allard, Sarah M, Bazinet, Adam L, Bergman, Nicholas H, Brown, Alexis, Caporaso, J Gregory, Conlan, Sean, DiRuggiero, Jocelyne, Forry, Samuel P, Hasan, Nur A, Kralj, Jason, Luethy, Paul M, Milton, Donald K, Ondov, Brian D, Preheim, Sarah, Ratnayake, Shashikala, Rogers, Stephanie M, Rosovitz, M J, Sakowski, Eric G, Schliebs, Nils Oliver, Sommer, Daniel D, Ternus, Krista L, Uritskiy, Gherman, Zhang, Sean X, Pop, Mihai, Treangen, Todd J
Published in Microbiome (05.11.2018)
Published in Microbiome (05.11.2018)
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Journal Article
Humoral Response to the HIV-1 Envelope V2 Region in a Thai Early Acute Infection Cohort
Trinh, Hung V, Gohain, Neelakshi, Pham, Peter T, Hamlin, Christopher, Song, Hongshuo, Sanders-Buell, Eric, Bose, Meera, Eller, Leigh A, Jain, Swati, Uritskiy, Gherman, Rao, Venigalla B, Tovanabutra, Sodsai, Michael, Nelson L, Robb, Merlin L, Joyce, M Gordon, Rao, Mangala
Published in Cells (Basel, Switzerland) (19.04.2019)
Published in Cells (Basel, Switzerland) (19.04.2019)
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Journal Article