MirGeneDB 2.1: toward a complete sampling of all major animal phyla
Fromm, Bastian, Høye, Eirik, Domanska, Diana, Zhong, Xiangfu, Aparicio-Puerta, Ernesto, Ovchinnikov, Vladimir, Umu, Sinan U, Chabot, Peter J, Kang, Wenjing, Aslanzadeh, Morteza, Tarbier, Marcel, Mármol-Sánchez, Emilio, Urgese, Gianvito, Johansen, Morten, Hovig, Eivind, Hackenberg, Michael, Friedländer, Marc R, Peterson, Kevin J
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software
Gardner, Paul P, Paterson, James M, McGimpsey, Stephanie, Ashari-Ghomi, Fatemeh, Umu, Sinan U, Pawlik, Aleksandra, Gavryushkin, Alex, Black, Michael A
Published in Genome Biology (16.02.2022)
Published in Genome Biology (16.02.2022)
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Journal Article
Profiling small RNAs in fecal immunochemical tests: is it possible?
Birkeland, Einar, Ferrero, Giulio, Pardini, Barbara, Umu, Sinan U, Tarallo, Sonia, Bulfamante, Sara, Hoff, Geir, Senore, Carlo, Rounge, Trine B, Naccarati, Alessio
Published in Molecular cancer (03.10.2023)
Published in Molecular cancer (03.10.2023)
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Journal Article
Serum RNAs can predict lung cancer up to 10 years prior to diagnosis
Umu, Sinan U, Langseth, Hilde, Zuber, Verena, Helland, Åslaug, Lyle, Robert, Rounge, Trine B
Published in eLife (11.02.2022)
Published in eLife (11.02.2022)
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Journal Article
Validation of miRNA signatures for ovarian cancer earlier detection in the pre-diagnosis setting using machine learning approaches
Stawiski, Konrad, Fortner, Renée T, Pestarino, Luca, Umu, Sinan U, Kaaks, Rudolf, Rounge, Trine B, Elias, Kevin M, Fendler, Wojciech, Langseth, Hilde
Published in Frontiers in oncology (25.06.2024)
Published in Frontiers in oncology (25.06.2024)
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Journal Article
Serum RNA Profiling in the 10-Years Period Prior to Diagnosis of Testicular Germ Cell Tumor
Burton, Joshua, Umu, Sinan U, Langseth, Hilde, Grotmol, Tom, Grimsrud, Tom K, Haugen, Trine B, Rounge, Trine B
Published in Frontiers in oncology (28.10.2020)
Published in Frontiers in oncology (28.10.2020)
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Journal Article
RNA Sequencing of Hepatobiliary Cancer Cell Lines: Data and Applications to Mutational and Transcriptomic Profiling
Scherer, Dominique, Dávila López, Marcela, Goeppert, Benjamin, Abrahamsson, Sanna, González Silos, Rosa, Nova, Igor, Marcelain, Katherine, Roa, Juan C., Ibberson, David, Umu, Sinan U., Rounge, Trine Ballestad, Roessler, Stephanie, Lorenzo Bermejo, Justo
Published in Cancers (03.09.2020)
Published in Cancers (03.09.2020)
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Journal Article
TRAINER: a general-purpose trainable short biosequence classifer
Ogul, Hasan, Kalkan, Alper T, Umu, Sinan U, Akkaya, Mahinur S
Published in Protein and peptide letters (01.10.2013)
Published in Protein and peptide letters (01.10.2013)
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Journal Article
Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity
Rounge, Trine B., Umu, Sinan U., Keller, Andreas, Meese, Eckart, Ursin, Giske, Tretli, Steinar, Lyle, Robert, Langseth, Hilde
Published in Scientific reports (05.12.2018)
Published in Scientific reports (05.12.2018)
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Journal Article
Epigenome‐Wide Analysis of Methylation Changes in the Sequence of Gallstone Disease, Dysplasia, and Gallbladder Cancer
Brägelmann, Johannes, Barahona Ponce, Carol, Marcelain, Katherine, Roessler, Stephanie, Goeppert, Benjamin, Gallegos, Ivan, Colombo, Alicia, Sanhueza, Verónica, Morales, Erik, Rivera, María Teresa, Toro, Gonzalo, Ortega, Alejandro, Müller, Bettina, Gabler, Fernando, Scherer, Dominique, Waldenberger, Melanie, Reischl, Eva, Boekstegers, Felix, Garate‐Calderon, Valentina, Umu, Sinan U., Rounge, Trine B., Popanda, Odilia, Lorenzo Bermejo, Justo
Published in Hepatology (Baltimore, Md.) (01.06.2021)
Published in Hepatology (Baltimore, Md.) (01.06.2021)
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Journal Article
Identification of Circulating lncRNAs Associated with Gallbladder Cancer Risk by Tissue-Based Preselection, Cis-eQTL Validation, and Analysis of Association with Genotype-Based Expression
Blandino, Alice, Scherer, Dominique, Rounge, Trine B, Umu, Sinan U, Boekstegers, Felix, Barahona Ponce, Carol, Marcelain, Katherine, Gárate-Calderón, Valentina, Waldenberger, Melanie, Morales, Erik, Rojas, Armando, Munoz, César, Retamales, Javier, de Toro, Gonzalo, Barajas, Olga, Rivera, María Teresa, Cortés, Analía, Loader, Denisse, Saavedra, Javiera, Gutiérrez, Lorena, Ortega, Alejandro, Bertrán, Maria Enriqueta, Gabler, Fernando, Campos, Mónica, Alvarado, Juan, Moisán, Fabrizio, Spencer, Loreto, Nervi, Bruno, Carvajal-Hausdorf, Daniel E, Losada, Héctor, Almau, Mauricio, Fernández, Plinio, Gallegos, Ivan, Olloquequi, Jordi, Fuentes-Guajardo, Macarena, Gonzalez-Jose, Rolando, Bortolini, Maria Cátira, Gallo, Carla, Linares, Andres Ruiz, Rothhammer, Francisco, Lorenzo Bermejo, Justo
Published in Cancers (27.01.2022)
Published in Cancers (27.01.2022)
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Journal Article
A probabilistic approach to microRNA-target binding
Oğul, Hasan, Umu, Sinan U., Tuncel, Y. Yener, Akkaya, Mahinur S.
Published in Biochemical and biophysical research communications (16.09.2011)
Published in Biochemical and biophysical research communications (16.09.2011)
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Journal Article
Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software
Gardner, Paul P, Paterson, James M, Mcgimpsey, Stephanie R, Fatemeh Ashari Ghomi, Umu, Sinan U, Pawlik, Aleksandra, Gavryushkin, Alex, Black, Michael A
Published in bioRxiv (02.09.2021)
Published in bioRxiv (02.09.2021)
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