A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways
Atashgahi, Siavash, Hornung, Bastian, van der Waals, Marcelle J., da Rocha, Ulisses Nunes, Hugenholtz, Floor, Nijsse, Bart, Molenaar, Douwe, van Spanning, Rob, Stams, Alfons Johannes Maria, Gerritse, Jan, Smidt, Hauke
Published in Scientific reports (14.03.2018)
Published in Scientific reports (14.03.2018)
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Journal Article
Exploring the Potential Molecular Mechanisms of Interactions between a Probiotic Consortium and Its Coral Host
Rosado, Phillipe M, Cardoso, Pedro M, Rosado, João G, Schultz, Júnia, Nunes da Rocha, Ulisses, Keller-Costa, Tina, Peixoto, Raquel S
Published in mSystems (23.02.2023)
Published in mSystems (23.02.2023)
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Journal Article
Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
Rosado, Phillipe M., Leite, Deborah C. A., Duarte, Gustavo A. S., Chaloub, Ricardo M., Jospin, Guillaume, Nunes da Rocha, Ulisses, P. Saraiva, João, Dini-Andreote, Francisco, Eisen, Jonathan A., Bourne, David G., Peixoto, Raquel S.
Published in The ISME Journal (01.04.2019)
Published in The ISME Journal (01.04.2019)
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Journal Article
Diversity of Ixodes ricinus tick-associated bacterial communities from different forests
van Overbeek, Leo, Gassner, Fedor, van der Plas, Carin Lombaers, Kastelein, Pieter, Nunes-da Rocha, Ulisses, Takken, Willem
Published in FEMS microbiology ecology (01.10.2008)
Published in FEMS microbiology ecology (01.10.2008)
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Journal Article
Conference Proceeding
Effect of bacterial inoculation, plant genotype and developmental stage on root-associated and endophytic bacterial communities in potato (Solanum tuberosum)
Andreote, Fernando Dini, Rocha, Ulisses Nunes da, Araújo, Welington Luiz, Azevedo, João Lúcio, van Overbeek, Leonard Simon
Published in Antonie van Leeuwenhoek (01.05.2010)
Published in Antonie van Leeuwenhoek (01.05.2010)
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Journal Article
Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes
Saraiva, Joao Pedro, Bartholomäus, Alexander, Toscan, Rodolfo Brizola, Baldrian, Petr, Nunes da Rocha, Ulisses
Published in Molecular ecology resources (01.07.2023)
Published in Molecular ecology resources (01.07.2023)
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Journal Article
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
Kasmanas, Jonas Coelho, Bartholomäus, Alexander, Corrêa, Felipe Borim, Tal, Tamara, Jehmlich, Nico, Herberth, Gunda, von Bergen, Martin, Stadler, Peter F, Carvalho, André Carlos Ponce de Leon Ferreira de, Nunes da Rocha, Ulisses
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Journal Article
Temperature management potentially affects carbon mineralization capacity and microbial community composition of a shallow aquifer
Metze, Dennis, Popp, Denny, Schwab, Laura, Keller, Nina-Sophie, da Rocha, Ulisses Nunes, Richnow, Hans-Hermann, Vogt, Carsten
Published in FEMS microbiology ecology (01.02.2021)
Published in FEMS microbiology ecology (01.02.2021)
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Journal Article
Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition
Tláskal, Vojtěch, Brabcová, Vendula, Větrovský, Tomáš, Jomura, Mayuko, López-Mondéjar, Rubén, Oliveira Monteiro, Lummy Maria, Saraiva, João Pedro, Human, Zander Rainier, Cajthaml, Tomáš, Nunes da Rocha, Ulisses, Baldrian, Petr
Published in mSystems (12.01.2021)
Published in mSystems (12.01.2021)
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Journal Article
The rhizosphere selects for particular groups of acidobacteria and verrucomicrobia
Nunes da Rocha, Ulisses, Plugge, Caroline M, George, Isabelle, van Elsas, Jan Dirk, van Overbeek, Leonard Simon
Published in PloS one (13.12.2013)
Published in PloS one (13.12.2013)
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Journal Article
Benzene degradation in a denitrifying biofilm reactor: activity and microbial community composition
van der Waals, Marcelle J., Atashgahi, Siavash, da Rocha, Ulisses Nunes, van der Zaan, Bas M., Smidt, Hauke, Gerritse, Jan
Published in Applied microbiology and biotechnology (01.06.2017)
Published in Applied microbiology and biotechnology (01.06.2017)
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Journal Article
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture
Liu, Bin, Sträuber, Heike, Saraiva, João, Harms, Hauke, Silva, Sandra Godinho, Kasmanas, Jonas Coelho, Kleinsteuber, Sabine, Nunes da Rocha, Ulisses
Published in Microbiome (25.03.2022)
Published in Microbiome (25.03.2022)
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Journal Article
Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa
Magnúsdóttir, Stefanía, Saraiva, Joao Pedro, Bartholomäus, Alexander, Soheili, Majid, Toscan, Rodolfo Brizola, Zhang, Junya, Nunes da Rocha, Ulisses
Published in Frontiers in microbiology (25.01.2023)
Published in Frontiers in microbiology (25.01.2023)
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Journal Article
Global Distribution of Carbohydrate Utilization Potential in the Prokaryotic Tree of Life
López-Mondéjar, Rubén, Tláskal, Vojtěch, da Rocha, Ulisses Nunes, Baldrian, Petr
Published in mSystems (20.12.2022)
Published in mSystems (20.12.2022)
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Journal Article
Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome
Keller-Costa, Tina, Kozma, Lydia, Silva, Sandra G., Toscan, Rodolfo, Gonçalves, Jorge, Lago-Lestón, Asunción, Kyrpides, Nikos C., Nunes da Rocha, Ulisses, Costa, Rodrigo
Published in Microbiome (22.09.2022)
Published in Microbiome (22.09.2022)
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Journal Article
Enrichment of Anaerobic Microbial Communities from Midgut and Hindgut of Sun Beetle Larvae ( Pachnoda marginata ) on Wheat Straw: Effect of Inoculum Preparation
Schroeder, Bruna Grosch, Logroño, Washington, Rocha, Ulisses Nunes da, Harms, Hauke, Nikolausz, Marcell
Published in Microorganisms (Basel) (31.03.2022)
Published in Microorganisms (Basel) (31.03.2022)
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Journal Article
Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters
Kallies, René, Hölzer, Martin, Brizola Toscan, Rodolfo, Nunes da Rocha, Ulisses, Anders, John, Marz, Manja, Chatzinotas, Antonis
Published in Viruses (28.05.2019)
Published in Viruses (28.05.2019)
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Journal Article