Gene and translation initiation site prediction in metagenomic sequences
HYATT, Doug, LOCASCIO, Philip F, HAULER, Loren J, UBERBACHER, Edward C
Published in Bioinformatics (01.09.2012)
Published in Bioinformatics (01.09.2012)
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Journal Article
CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database
Park, Byung H, Karpinets, Tatiana V, Syed, Mustafa H, Leuze, Michael R, Uberbacher, Edward C
Published in Glycobiology (Oxford) (01.12.2010)
Published in Glycobiology (Oxford) (01.12.2010)
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MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression
Paugh, Steven W, Coss, David R, Bao, Ju, Laudermilk, Lucas T, Grace, Christy R, Ferreira, Antonio M, Waddell, M Brett, Ridout, Granger, Naeve, Deanna, Leuze, Michael, LoCascio, Philip F, Panetta, John C, Wilkinson, Mark R, Pui, Ching-Hon, Naeve, Clayton W, Uberbacher, Edward C, Bonten, Erik J, Evans, William E
Published in PLoS computational biology (04.02.2016)
Published in PLoS computational biology (04.02.2016)
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Initial Recognition of a Cellodextrin Chain in the Cellulose-Binding Tunnel May Affect Cellobiohydrolase Directional Specificity
GhattyVenkataKrishna, Pavan K., Alekozai, Emal M., Beckham, Gregg T., Schulz, Roland, Crowley, Michael F., Uberbacher, Edward C., Cheng, Xiaolin
Published in Biophysical journal (19.02.2013)
Published in Biophysical journal (19.02.2013)
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Journal Article
Effect of the amyloid β hairpin’s structure on the handedness of helices formed by its aggregates
GhattyVenkataKrishna, Pavan K., Uberbacher, Edward C., Cheng, Xiaolin
Published in FEBS letters (19.08.2013)
Published in FEBS letters (19.08.2013)
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Journal Article
Metabolic environments and genomic features associated with pathogenic and mutualistic interactions between bacteria and plants
Karpinets, Tatiana V, Park, Byung H, Syed, Mustafa H, Klotz, Martin G, Uberbacher, Edward C
Published in Molecular plant-microbe interactions (01.07.2014)
Published in Molecular plant-microbe interactions (01.07.2014)
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Journal Article
Ebolavirus comparative genomics
Jun, Se-Ran, Leuze, Michael R., Nookaew, Intawat, Uberbacher, Edward C., Land, Miriam, Zhang, Qian, Wanchai, Visanu, Chai, Juanjuan, Nielsen, Morten, Trolle, Thomas, Lund, Ole, Buzard, Gregory S., Pedersen, Thomas D., Wassenaar, Trudy M., Ussery, David W.
Published in FEMS microbiology reviews (01.09.2015)
Published in FEMS microbiology reviews (01.09.2015)
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Analyzing large biological datasets with association networks
Karpinets, Tatiana V, Park, Byung H, Uberbacher, Edward C
Published in Nucleic acids research (01.09.2012)
Published in Nucleic acids research (01.09.2012)
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Journal Article
Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA
Leuze, Michael R., Karpinets, Tatiana V., Syed, Mustafa H., Beliaev, Alexander S., Uberbacher, Edward C.
Published in Gene Regulation and Systems Biology (01.01.2012)
Published in Gene Regulation and Systems Biology (01.01.2012)
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Journal Article
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions
Karpinets, Tatiana V, Romine, Margaret F, Schmoyer, Denise D, Kora, Guruprasad H, Syed, Mustafa H, Leuze, Michael R, Serres, Margrethe H, Park, Byung H, Samatova, Nagiza F, Uberbacher, Edward C
Published in Database : the journal of biological databases and curation (01.01.2010)
Published in Database : the journal of biological databases and curation (01.01.2010)
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Journal Article
Phenotype fingerprinting suggests the involvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris
Karpinets, Tatiana V, Pelletier, Dale A, Pan, Chongle, Uberbacher, Edward C, Melnichenko, Galina V, Hettich, Robert L, Samatova, Nagiza F
Published in PloS one (26.02.2009)
Published in PloS one (26.02.2009)
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Journal Article
Simulation analysis of the cellulase Cel7A carbohydrate binding module on the surface of the cellulose Iβ
Alekozai, Emal M, GhattyVenkataKrishna, Pavan K, Uberbacher, Edward C, Crowley, Michael F, Smith, Jeremy C, Cheng, Xiaolin
Published in Cellulose (London) (01.04.2014)
Published in Cellulose (London) (01.04.2014)
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Journal Article
BESC knowledgebase public portal
SYED, Mustafa H, KARPINETS, Tatiana V, PARANG, Morey, LEUZE, Michael R, PARK, Byung H, HYATT, Doug, BROWN, Steven D, MOULTON, Steve, GALLOWAY, Michael D, UBERBACHER, Edward C
Published in Bioinformatics (Oxford, England) (01.03.2012)
Published in Bioinformatics (Oxford, England) (01.03.2012)
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MASPIC: Intensity-Based Tandem Mass Spectrometry Scoring Scheme That Improves Peptide Identification at High Confidence
Narasimhan, Chandrasegaran, Tabb, David L, VerBerkmoes, Nathan C, Thompson, Melissa R, Hettich, Robert L, Uberbacher, Edward C
Published in Analytical chemistry (Washington) (01.12.2005)
Published in Analytical chemistry (Washington) (01.12.2005)
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A computational method for assessing peptide- identification reliability in tandem mass spectrometry analysis with SEQUEST
Razumovskaya, Jane, Olman, Victor, Xu, Dong, Uberbacher, Edward C., VerBerkmoes, Nathan C., Hettich, Robert L., Xu, Ying
Published in Proteomics (Weinheim) (01.04.2004)
Published in Proteomics (Weinheim) (01.04.2004)
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Conserved synteny at the protein family level reveals genes underlying Shewanella species’ cold tolerance and predicts their novel phenotypes
Karpinets, Tatiana V., Obraztsova, Anna Y., Wang, Yanbing, Schmoyer, Denise D., Kora, Guruprasad H., Park, Byung H., Serres, Margrethe H., Romine, Margaret F., Land, Miriam L., Kothe, Terence B., Fredrickson, Jim K., Nealson, Kenneth H., Uberbacher, Edward C.
Published in Functional & integrative genomics (01.03.2010)
Published in Functional & integrative genomics (01.03.2010)
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