Machine Learning Methods in Drug Discovery
Patel, Lauv, Shukla, Tripti, Huang, Xiuzhen, Ussery, David W, Wang, Shanzhi
Published in Molecules (Basel, Switzerland) (12.11.2020)
Published in Molecules (Basel, Switzerland) (12.11.2020)
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Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D
Jenjaroenpun, Piroon, Wongsurawat, Thidathip, Pereira, Rui, Patumcharoenpol, Preecha, Ussery, David W, Nielsen, Jens, Nookaew, Intawat
Published in Nucleic acids research (20.04.2018)
Published in Nucleic acids research (20.04.2018)
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Decoding the epitranscriptional landscape from native RNA sequences
Jenjaroenpun, Piroon, Wongsurawat, Thidathip, Wadley, Taylor D, Wassenaar, Trudy M, Liu, Jun, Dai, Qing, Wanchai, Visanu, Akel, Nisreen S, Jamshidi-Parsian, Azemat, Franco, Aime T, Boysen, Gunnar, Jennings, Michael L, Ussery, David W, He, Chuan, Nookaew, Intawat
Published in Nucleic acids research (25.01.2021)
Published in Nucleic acids research (25.01.2021)
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Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
LARSEN, Mette V, COSENTINO, Salvatore, LUND, Ole, RASMUSSEN, Simon, FRIIS, Carsten, HASMAN, Henrik, LYKKE MARVIG, Rasmus, JELSBAK, Lars, SICHERITZ-PONTEN, Thomas, USSERY, David W, AARESTRUP, Frank M
Published in Journal of Clinical Microbiology (01.04.2012)
Published in Journal of Clinical Microbiology (01.04.2012)
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Benchmarking of methods for genomic taxonomy
Larsen, Mette V, Cosentino, Salvatore, Lukjancenko, Oksana, Saputra, Dhany, Rasmussen, Simon, Hasman, Henrik, Sicheritz-Pontén, Thomas, Aarestrup, Frank M, Ussery, David W, Lund, Ole
Published in Journal of clinical microbiology (01.05.2014)
Published in Journal of clinical microbiology (01.05.2014)
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Insights from 20 years of bacterial genome sequencing
Land, Miriam, Hauser, Loren, Jun, Se-Ran, Nookaew, Intawat, Leuze, Michael R., Ahn, Tae-Hyuk, Karpinets, Tatiana, Lund, Ole, Kora, Guruprased, Wassenaar, Trudy, Poudel, Suresh, Ussery, David W.
Published in Functional & integrative genomics (01.03.2015)
Published in Functional & integrative genomics (01.03.2015)
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Journal Article
Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak
Wassenaar, Trudy M., Wanchai, Visanu, Ussery, David W.
Published in Journal of applied microbiology (01.12.2022)
Published in Journal of applied microbiology (01.12.2022)
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Lagesen, Karin, Hallin, Peter, Rødland, Einar Andreas, Stærfeldt, Hans-Henrik, Rognes, Torbjørn, Ussery, David W
Published in Nucleic acids research (01.05.2007)
Published in Nucleic acids research (01.05.2007)
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Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
Kaas, Rolf S, Friis, Carsten, Ussery, David W, Aarestrup, Frank M
Published in BMC genomics (31.10.2012)
Published in BMC genomics (31.10.2012)
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Journal Article
Case of Microcephaly after Congenital Infection with Asian Lineage Zika Virus, Thailand
Wongsurawat, Thidathip, Athipanyasilp, Niracha, Jenjaroenpun, Piroon, Jun, Se-Ran, Kaewnapan, Bualan, Wassenaar, Trudy M, Leelahakorn, Nuttawut, Angkasekwinai, Nasikarn, Kantakamalakul, Wannee, Ussery, David W, Sutthent, Ruengpung, Nookaew, Intawat, Horthongkham, Navin
Published in Emerging infectious diseases (01.09.2018)
Published in Emerging infectious diseases (01.09.2018)
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Journal Article
transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
Kröger, Carsten, Dillon, Shane C, Cameron, Andrew D. S, Papenfort, Kai, Sivasankaran, Sathesh K, Hokamp, Karsten, Chao, Yanjie, Sittka, Alexandra, Hébrard, Magali, Händler, Kristian, Colgan, Aoife, Leekitcharoenphon, Pimlapas, Langridge, Gemma C, Lohan, Amanda J, Loftus, Brendan, Lucchini, Sacha, Ussery, David W, Dorman, Charles J, Thomson, Nicholas R, Vogel, Jörg, Hinton, Jay C. D
Published in Proceedings of the National Academy of Sciences - PNAS (15.05.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (15.05.2012)
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Journal Article
Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104
Leekitcharoenphon, Pimlapas, Hendriksen, Rene S, Le Hello, Simon, Weill, François-Xavier, Baggesen, Dorte Lau, Jun, Se-Ran, Ussery, David W, Lund, Ole, Crook, Derrick W, Wilson, Daniel J, Aarestrup, Frank M
Published in Applied and environmental microbiology (01.04.2016)
Published in Applied and environmental microbiology (01.04.2016)
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Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?
Jun, Se-Ran, Wassenaar, Trudy M, Wanchai, Visanu, Patumcharoenpol, Preecha, Nookaew, Intawat, Ussery, David W
Published in BMC bioinformatics (28.12.2017)
Published in BMC bioinformatics (28.12.2017)
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Microbial taxonomy in the post-genomic era: Rebuilding from scratch?
Thompson, Cristiane C, Amaral, Gilda R, Campeão, Mariana, Edwards, Robert A, Polz, Martin F, Dutilh, Bas E, Ussery, David W, Sawabe, Tomoo, Swings, Jean, Thompson, Fabiano L
Published in Archives of microbiology (01.04.2015)
Published in Archives of microbiology (01.04.2015)
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Journal Article
Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis
Jun, Se-Ran, Wassenaar, Trudy M, Nookaew, Intawat, Hauser, Loren, Wanchai, Visanu, Land, Miriam, Timm, Collin M, Lu, Tse-Yuan S, Schadt, Christopher W, Doktycz, Mitchel J, Pelletier, Dale A, Ussery, David W
Published in Applied and Environmental Microbiology (01.01.2016)
Published in Applied and Environmental Microbiology (01.01.2016)
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Genomic surveillance of SARS-CoV-2 using long-range PCR primers
Kandel, Sangam, Hartzell, Susanna L, Ingold, Ashton K, Turner, Grace A, Kennedy, Joshua L, Ussery, David W
Published in Frontiers in microbiology (14.02.2024)
Published in Frontiers in microbiology (14.02.2024)
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Journal Article
Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
Abram, Kaleb, Udaondo, Zulema, Bleker, Carissa, Wanchai, Visanu, Wassenaar, Trudy M., Robeson, Michael S., Ussery, David W.
Published in Communications biology (26.01.2021)
Published in Communications biology (26.01.2021)
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