Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes
Franco, Mario E. E., Wisecaver, Jennifer H., Arnold, A. Elizabeth, Ju, Yu‐Ming, Slot, Jason C., Ahrendt, Steven, Moore, Lillian P., Eastman, Katharine E., Scott, Kelsey, Konkel, Zachary, Mondo, Stephen J., Kuo, Alan, Hayes, Richard D., Haridas, Sajeet, Andreopoulos, Bill, Riley, Robert, LaButti, Kurt, Pangilinan, Jasmyn, Lipzen, Anna, Amirebrahimi, Mojgan, Yan, Juying, Adam, Catherine, Keymanesh, Keykhosrow, Ng, Vivian, Louie, Katherine, Northen, Trent, Drula, Elodie, Henrissat, Bernard, Hsieh, Huei‐Mei, Youens‐Clark, Ken, Lutzoni, François, Miadlikowska, Jolanta, Eastwood, Daniel C., Hamelin, Richard C., Grigoriev, Igor V., U’Ren, Jana M.
Published in The New phytologist (01.02.2022)
Published in The New phytologist (01.02.2022)
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Journal Article
Phage hunters: Computational strategies for finding phages in large-scale ‘omics datasets
Hurwitz, Bonnie L., Ponsero, Alise, Thornton, James, U’Ren, Jana M.
Published in Virus research (15.01.2018)
Published in Virus research (15.01.2018)
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Computational prospecting the great viral unknown
Hurwitz, Bonnie L., U'Ren, Jana M., Youens-Clark, Ken
Published in FEMS microbiology letters (01.05.2016)
Published in FEMS microbiology letters (01.05.2016)
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Journal Article
Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species
Oono, Ryoko, Lutzoni, François, Arnold, A. Elizabeth, Kaye, Laurel, U’Ren, Jana M, May, Georgiana, Carbone, Ignazio
Published in American journal of botany (01.08.2014)
Published in American journal of botany (01.08.2014)
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Journal Article
T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life
Carbone, Ignazio, White, James B, Miadlikowska, Jolanta, Arnold, A Elizabeth, Miller, Mark A, Kauff, Frank, U'Ren, Jana M, May, Georgiana, Lutzoni, François
Published in Bioinformatics (Oxford, England) (15.04.2017)
Published in Bioinformatics (Oxford, England) (15.04.2017)
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
Fauchery, Laure, Koriabine, Maxim, Moore, Lillian P, Yoshinaga, Yuko, Barry, Kerrie, Kohler, Annegret, U'Ren, Jana M
Published in Methods in molecular biology (Clifton, N.J.) (2023)
Published in Methods in molecular biology (Clifton, N.J.) (2023)
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Tissue storage and primer selection influence pyrosequencing‐based inferences of diversity and community composition of endolichenic and endophytic fungi
U'Ren, Jana M, Riddle, Jakob M, Monacell, James T, Carbone, Ignazio, Miadlikowska, Jolanta, Arnold, A. Elizabeth
Published in Molecular ecology resources (01.09.2014)
Published in Molecular ecology resources (01.09.2014)
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Journal Article
An Endohyphal Bacterium ( Chitinophaga , Bacteroidetes) Alters Carbon Source Use by Fusarium keratoplasticum ( F. solani Species Complex, Nectriaceae)
Shaffer, Justin P, U'Ren, Jana M, Gallery, Rachel E, Baltrus, David A, Arnold, A Elizabeth
Published in Frontiers in microbiology (14.03.2017)
Published in Frontiers in microbiology (14.03.2017)
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Journal Article
T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
Carbone, Ignazio, White, James B, Miadlikowska, Jolanta, Arnold, A Elizabeth, Miller, Mark A, Magain, Nicolas, U'Ren, Jana M, Lutzoni, François
Published in Microbiology resource announcements (18.07.2019)
Published in Microbiology resource announcements (18.07.2019)
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Web Resource
Coniochaeta elegans sp. nov., Coniochaeta montana sp. nov. and Coniochaeta nivea sp. nov., three new species of endophytes with distinctive morphology and functional traits
Arnold, A Elizabeth, Harrington, Alison H, Huang, Yu-Ling, U'Ren, Jana M, Massimo, Nicholas C, Knight-Connoni, Victoria, Inderbitzin, Patrik
Published in International journal of systematic and evolutionary microbiology (01.11.2021)
Published in International journal of systematic and evolutionary microbiology (01.11.2021)
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Journal Article
Global genetic population structure of Bacillus anthracis
Van Ert, Matthew N, Easterday, W Ryan, Huynh, Lynn Y, Okinaka, Richard T, Hugh-Jones, Martin E, Ravel, Jacques, Zanecki, Shaylan R, Pearson, Talima, Simonson, Tatum S, U'Ren, Jana M, Kachur, Sergey M, Leadem-Dougherty, Rebecca R, Rhoton, Shane D, Zinser, Guenevier, Farlow, Jason, Coker, Pamala R, Smith, Kimothy L, Wang, Bingxiang, Kenefic, Leo J, Fraser-Liggett, Claire M, Wagner, David M, Keim, Paul
Published in PloS one (23.05.2007)
Published in PloS one (23.05.2007)
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Bacillus anthracis in China and its relationship to worldwide lineages
Simonson, Tatum S, Okinaka, Richard T, Wang, Bingxiang, Easterday, W Ryan, Huynh, Lynn, U'Ren, Jana M, Dukerich, Meghan, Zanecki, Shaylan R, Kenefic, Leo J, Beaudry, Jodi, Schupp, James M, Pearson, Talima, Wagner, David M, Hoffmaster, Alex, Ravel, Jacques, Keim, Paul
Published in BMC microbiology (15.04.2009)
Published in BMC microbiology (15.04.2009)
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Using collections data to infer biogeographic, environmental, and host structure in communities of endophytic fungi
Huang, Yu-Ling, Bowman, Elizabeth A., Massimo, Nicholas C., Garber, Nicholas P., U'Ren, Jana M., Sandberg, Dustin C., Arnold, A. Elizabeth
Published in Mycologia (01.01.2018)
Published in Mycologia (01.01.2018)
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Phylogenetic Discovery Bias in Bacillus anthracis Using Single-Nucleotide Polymorphisms from Whole-Genome Sequencing
Pearson, Talima, Busch, Joseph D., Ravel, Jacques, Read, Timothy D., Rhoton, Shane D., Jana M. U'Ren, Simonson, Tatum S., Kachur, Sergey M., Leadem, Rebecca R., Cardon, Michelle L., Van Ert, Matthew N., Huynh, Lynn Y., Fraser, Claire M., Keim, Paul, Falkow, Stanley
Published in Proceedings of the National Academy of Sciences - PNAS (14.09.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (14.09.2004)
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Erratum to: Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale
Chagnon, Pierre-Luc, U’Ren, Jana M., Miadlikowska, Jolanta, Lutzoni, François, Arnold, A. Elizabeth
Published in Oecologia (01.06.2016)
Published in Oecologia (01.06.2016)
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