The blood DNA virome in 8,000 humans
Moustafa, Ahmed, Xie, Chao, Kirkness, Ewen, Biggs, William, Wong, Emily, Turpaz, Yaron, Bloom, Kenneth, Delwart, Eric, Nelson, Karen E, Venter, J Craig, Telenti, Amalio
Published in PLoS pathogens (01.03.2017)
Published in PLoS pathogens (01.03.2017)
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CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
Dundas, Joe, Ouyang, Zheng, Tseng, Jeffery, Binkowski, Andrew, Turpaz, Yaron, Liang, Jie
Published in Nucleic acids research (01.07.2006)
Published in Nucleic acids research (01.07.2006)
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Deep sequencing of 10,000 human genomes
Telenti, Amalio, Pierce, Levi C. T., Biggs, William H., di Iulio, Julia, Wong, Emily H. M., Fabani, Martin M., Kirkness, Ewen F., Moustafa, Ahmed, Shah, Naisha, Xie, Chao, Brewerton, Suzanne C., Bulsara, Nadeem, Garner, Chad, Metzker, Gary, Sandoval, Efren, Perkins, Brad A., Och, Franz J., Turpaz, Yaron, Venter, J. Craig
Published in Proceedings of the National Academy of Sciences - PNAS (18.10.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (18.10.2016)
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Cistrome: an integrative platform for transcriptional regulation studies
Liu, Tao, Ortiz, Jorge A, Taing, Len, Meyer, Clifford A, Lee, Bernett, Zhang, Yong, Shin, Hyunjin, Wong, Swee S, Ma, Jian, Lei, Ying, Pape, Utz J, Poidinger, Michael, Chen, Yiwen, Yeung, Kevin, Brown, Myles, Turpaz, Yaron, Liu, X Shirley
Published in Genome biology (22.08.2011)
Published in Genome biology (22.08.2011)
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CYP4F2 genetic variant alters required warfarin dose
Caldwell, Michael D., Awad, Tarif, Johnson, Julie A., Gage, Brian F., Falkowski, Mat, Gardina, Paul, Hubbard, Jason, Turpaz, Yaron, Langaee, Taimour Y., Eby, Charles, King, Cristi R., Brower, Amy, Schmelzer, John R., Glurich, Ingrid, Vidaillet, Humberto J., Yale, Steven H., Qi Zhang, Kai, Berg, Richard L., Burmester, James K.
Published in Blood (15.04.2008)
Published in Blood (15.04.2008)
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Identification of individuals by trait prediction using whole-genome sequencing data
Lippert, Christoph, Sabatini, Riccardo, Maher, M. Cyrus, Kang, Eun Yong, Lee, Seunghak, Arikan, Okan, Harley, Alena, Bernal, Axel, Garst, Peter, Lavrenko, Victor, Yocum, Ken, Wong, Theodore, Zhu, Mingfu, Yang, Wen-Yun, Chang, Chris, Lu, Tim, Lee, Charlie W. H., Hicks, Barry, Ramakrishnan, Smriti, Tang, Haibao, Xie, Chao, Piper, Jason, Brewerton, Suzanne, Turpaz, Yaron, Telenti, Amalio, Roby, Rhonda K., Och, Franz J., Venter, J. Craig
Published in Proceedings of the National Academy of Sciences - PNAS (19.09.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (19.09.2017)
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Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
Gardina, Paul J, Clark, Tyson A, Shimada, Brian, Staples, Michelle K, Yang, Qing, Veitch, James, Schweitzer, Anthony, Awad, Tarif, Sugnet, Charles, Dee, Suzanne, Davies, Christopher, Williams, Alan, Turpaz, Yaron
Published in BMC genomics (27.12.2006)
Published in BMC genomics (27.12.2006)
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Precision medicine screening using whole-genome sequencing and advanced imaging to identify disease risk in adults
Perkins, Bradley A., Caskey, C. Thomas, Brar, Pamila, Dec, Eric, Karow, David S., Kahn, Andrew M., Hou, Ying-Chen Claire, Shah, Naisha, Boeldt, Debbie, Coughlin, Erin, Hands, Gabby, Lavrenko, Victor, Yu, James, Procko, Andrea, Appis, Julia, Dale, Anders M., Guo, Lining, Jönsson, Thomas J., Wittmann, Bryan M., Bartha, Istvan, Ramakrishnan, Smriti, Bernal, Axel, Brewer, James B., Brewerton, Suzanne, Biggs, William H., Turpaz, Yaron, Venter, J. Craig
Published in Proceedings of the National Academy of Sciences - PNAS (03.04.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (03.04.2018)
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Whole-genome sequencing identifies common-to-rare variants associated with human blood metabolites
Long, Tao, Hicks, Michael, Yu, Hung-Chun, Biggs, William H, Kirkness, Ewen F, Menni, Cristina, Zierer, Jonas, Small, Kerrin S, Mangino, Massimo, Messier, Helen, Brewerton, Suzanne, Turpaz, Yaron, Perkins, Brad A, Evans, Anne M, Miller, Luke A D, Guo, Lining, Caskey, C Thomas, Schork, Nicholas J, Garner, Chad, Spector, Tim D, Venter, J Craig, Telenti, Amalio
Published in Nature genetics (01.04.2017)
Published in Nature genetics (01.04.2017)
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Fast and accurate HLA typing from short-read next-generation sequence data with xHLA
Xie, Chao, Yeo, Zhen Xuan, Wong, Marie, Piper, Jason, Long, Tao, Kirkness, Ewen F., Biggs, William H., Bloom, Ken, Spellman, Stephen, Vierra-Green, Cynthia, Brady, Colleen, Scheuermann, Richard H., Telenti, Amalio, Howard, Sally, Brewerton, Suzanne, Turpaz, Yaron, Venter, J. Craig
Published in Proceedings of the National Academy of Sciences - PNAS (25.07.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (25.07.2017)
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The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
Shi, Leming, Jones, Wendell D, Jensen, Roderick V, Harris, Stephen C, Perkins, Roger G, Goodsaid, Federico M, Guo, Lei, Croner, Lisa J, Boysen, Cecilie, Fang, Hong, Qian, Feng, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick J, Fan, Xiao-Hui, Frueh, Felix W, Fuscoe, James C, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest S, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron L, Puri, Raj K, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue Jane, Warrington, Janet A, Willey, James C, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Wolfinger, Russell D, Tong, Weida
Published in BMC bioinformatics (12.08.2008)
Published in BMC bioinformatics (12.08.2008)
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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Shi, Leming, Reid, Laura H, Jones, Wendell D, Shippy, Richard, Warrington, Janet A, Baker, Shawn C, Collins, Patrick J, de Longueville, Francoise, Kawasaki, Ernest S, Lee, Kathleen Y, Luo, Yuling, Sun, Yongming Andrew, Willey, James C, Setterquist, Robert A, Fischer, Gavin M, Tong, Weida, Dragan, Yvonne P, Dix, David J, Frueh, Felix W, Goodsaid, Frederico M, Herman, Damir, Jensen, Roderick V, Johnson, Charles D, Lobenhofer, Edward K, Puri, Raj K, Schrf, Uwe, Thierry-Mieg, Jean, Wang, Charles, Wilson, Mike, Wolber, Paul K, Zhang, Lu, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Lucas, Anne Bergstrom, Bertholet, Vincent, Boysen, Cecilie, Bromley, Bud, Brown, Donna, Brunner, Alan, Canales, Roger, Cao, Xiaoxi Megan, Cebula, Thomas A, Chen, James J, Cheng, Jing, Chu, Tzu-Ming, Chudin, Eugene, Corson, John, Corton, J Christopher, Croner, Lisa J, Davies, Christopher, Davison, Timothy S, Delenstarr, Glenda, Deng, Xutao, Dorris, David, Eklund, Aron C, Fan, Xiao-hui, Fang, Hong, Fulmer-Smentek, Stephanie, Fuscoe, James C, Gallagher, Kathryn, Ge, Weigong, Guo, Lei, Guo, Xu, Hager, Janet, Haje, Paul K, Han, Jing, Han, Tao, Harbottle, Heather C, Harris, Stephen C, Hatchwell, Eli, Hauser, Craig A, Hester, Susan, Hong, Huixiao, Hurban, Patrick, Jackson, Scott A, Ji, Hanlee, Knight, Charles R, Kuo, Winston P, LeClerc, J Eugene, Levy, Shawn, Li, Quan-Zhen, Liu, Chunmei, Liu, Ying, Lombardi, Michael J, Ma, Yunqing, Magnuson, Scott R, Maqsodi, Botoul, McDaniel, Tim, Mei, Nan, Myklebost, Ola, Ning, Baitang, Novoradovskaya, Natalia, Orr, Michael S, Osborn, Terry W, Papallo, Adam, Patterson, Tucker A, Perkins, Roger G, Peters, Elizabeth H, Peterson, Ron
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Using RNA sample titrations to assess microarray platform performance and normalization techniques
Shippy, Richard, Fulmer-Smentek, Stephanie, Jensen, Roderick V, Jones, Wendell D, Wolber, Paul K, Johnson, Charles D, Pine, P Scott, Boysen, Cecilie, Guo, Xu, Chudin, Eugene, Sun, Yongming Andrew, Willey, James C, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Setterquist, Robert A, Wilson, Mike, Lucas, Anne Bergstrom, Novoradovskaya, Natalia, Papallo, Adam, Turpaz, Yaron, Baker, Shawn C, Warrington, Janet A, Shi, Leming, Herman, Damir
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Abstract 4292: Gene model correction for PVRIG and TIGIT in single cell sequencing data enables accurate detection and study of its functional relevance
Nemzer, Sergey, Sabath, Niv, Wool, Assaf, Altber, Zoya, Ando, Hirofumi, Pardoll, Drew M., Ganguly, Sudipto, Turpaz, Yaron, Levine, Zurit, Granit, Roy Z.
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping Arrays
Gardina, Paul J, Lo, Ken C, Lee, Walter, Cowell, John K, Turpaz, Yaron
Published in BMC genomics (17.10.2008)
Published in BMC genomics (17.10.2008)
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A gene expression signature of CD34+ cells to predict major cytogenetic response in chronic-phase chronic myeloid leukemia patients treated with imatinib
McWeeney, Shannon K., Pemberton, Lucy C., Loriaux, Marc M., Vartanian, Kristina, Willis, Stephanie G., Yochum, Gregory, Wilmot, Beth, Turpaz, Yaron, Pillai, Raji, Druker, Brian J., Snead, Jennifer L., MacPartlin, Mary, O'Brien, Stephen G., Melo, Junia V., Lange, Thoralf, Harrington, Christina A., Deininger, Michael W.N.
Published in Blood (14.01.2010)
Published in Blood (14.01.2010)
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Comprehensive analysis of loss of heterozygosity events in glioblastoma using the 100K SNP mapping arrays and comparison with copy number abnormalities defined by BAC array comparative genomic hybridization
Lo, Ken C., Bailey, Dione, Burkhardt, Tania, Gardina, Paul, Turpaz, Yaron, Cowell, John K.
Published in Genes chromosomes & cancer (01.03.2008)
Published in Genes chromosomes & cancer (01.03.2008)
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The DNA Architectural Protein HMGB1 Facilitates RTA-Mediated Viral Gene Expression in Gamma-2 Herpesviruses
Song, Moon Jung, Hwang, Seungmin, Wong, Wendy, Round, June, Martinez-Guzman, Deeann, Turpaz, Yaron, Liang, Jie, Wong, Ben, Johnson, Reid C, Carey, Michael, Sun, Ren
Published in Journal of Virology (01.12.2004)
Published in Journal of Virology (01.12.2004)
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