Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England
Davies, Nicholas G, Abbott, Sam, Barnard, Rosanna C, Jarvis, Christopher I, Kucharski, Adam J, Munday, James D, Pearson, Carl A B, Russell, Timothy W, Tully, Damien C, Washburne, Alex D, Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry L M, van Zandvoort, Kevin, Silverman, Justin D, Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M, Funk, Sebastian, Jit, Mark, Atkins, Katherine E, Edmunds, W John
Published in Science (09.04.2021)
Published in Science (09.04.2021)
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The epigenetic landscape of T cell exhaustion
Sen, Debattama R., Kaminski, James, Barnitz, R. Anthony, Kurachi, Makoto, Gerdemann, Ulrike, Yates, Kathleen B., Tsao, Hsiao-Wei, Godec, Jernej, LaFleur, Martin W., Brown, Flavian D., Tonnerre, Pierre, Chung, Raymond T., Tully, Damien C., Allen, Todd M., Frahm, Nicole, Lauer, Georg M., Wherry, E. John, Yosef, Nir, Haining, W. Nicholas
Published in Science (American Association for the Advancement of Science) (02.12.2016)
Published in Science (American Association for the Advancement of Science) (02.12.2016)
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Early prediction of mortality risk among patients with severe COVID-19, using machine learning
Hu, Chuanyu, Liu, Zhenqiu, Jiang, Yanfeng, Shi, Oumin, Zhang, Xin, Xu, Kelin, Suo, Chen, Wang, Qin, Song, Yujing, Yu, Kangkang, Mao, Xianhua, Wu, Xuefu, Wu, Mingshan, Shi, Tingting, Jiang, Wei, Mu, Lina, Tully, Damien C, Xu, Lei, Jin, Li, Li, Shusheng, Tao, Xuejin, Zhang, Tiejun, Chen, Xingdong
Published in International Journal of Epidemiology (23.01.2021)
Published in International Journal of Epidemiology (23.01.2021)
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Epigenetic scars of CD8 + T cell exhaustion persist after cure of chronic infection in humans
Yates, Kathleen B, Tonnerre, Pierre, Martin, Genevieve E, Gerdemann, Ulrike, Al Abosy, Rose, Comstock, Dawn E, Weiss, Sarah A, Wolski, David, Tully, Damien C, Chung, Raymond T, Allen, Todd M, Kim, Arthur Y, Fidler, Sarah, Fox, Julie, Frater, John, Lauer, Georg M, Haining, W Nicholas, Sen, Debattama R
Published in Nature immunology (01.08.2021)
Published in Nature immunology (01.08.2021)
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Early Transcriptional Divergence Marks Virus-Specific Primary Human CD8+ T Cells in Chronic versus Acute Infection
Wolski, David, Foote, Peter K., Chen, Diana Y., Lewis-Ximenez, Lia L., Fauvelle, Catherine, Aneja, Jasneet, Walker, Andreas, Tonnerre, Pierre, Torres-Cornejo, Almudena, Kvistad, Daniel, Imam, Sabrina, Waring, Michael T., Tully, Damien C., Allen, Todd M., Chung, Raymond T., Timm, Jörg, Haining, W. Nicholas, Kim, Arthur Y., Baumert, Thomas F., Lauer, Georg M.
Published in Immunity (Cambridge, Mass.) (17.10.2017)
Published in Immunity (Cambridge, Mass.) (17.10.2017)
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Prevalence of transmitted HIV-1 drug resistance among treatment-naive individuals in China, 2000-2016
Yuan, Huangbo, Liu, Zhenqiu, Wu, Xuefu, Wu, Mingshan, Fang, Qiwen, Zhang, Xin, Shi, Tingting, Tully, Damien C., Zhang, Tiejun
Published in Archives of virology (01.09.2021)
Published in Archives of virology (01.09.2021)
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Differentiation of exhausted CD8 + T cells after termination of chronic antigen stimulation stops short of achieving functional T cell memory
Tonnerre, Pierre, Wolski, David, Subudhi, Sonu, Aljabban, Jihad, Hoogeveen, Ruben C, Damasio, Marcos, Drescher, Hannah K, Bartsch, Lea M, Tully, Damien C, Sen, Debattama R, Bean, David J, Brown, Joelle, Torres-Cornejo, Almudena, Robidoux, Maxwell, Kvistad, Daniel, Alatrakchi, Nadia, Cui, Ang, Lieb, David, Cheney, James A, Gustafson, Jenna, Lewis-Ximenez, Lia L, Massenet-Regad, Lucile, Eisenhaure, Thomas, Aneja, Jasneet, Haining, W Nicholas, Chung, Raymond T, Hacohen, Nir, Allen, Todd M, Kim, Arthur Y, Lauer, Georg M
Published in Nature immunology (01.08.2021)
Published in Nature immunology (01.08.2021)
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Emergence of Novel Norovirus GII.4 Variant
Chhabra, Preeti, Tully, Damien C, Mans, Janet, Niendorf, Sandra, Barclay, Leslie, Cannon, Jennifer L, Montmayeur, Anna M, Pan, Chao-Yang, Page, Nicola, Williams, Rachel, Tutill, Helena, Roy, Sunando, Celma, Cristina, Beard, Stuart, Mallory, Michael L, Manouana, Gédéon Prince, Velavan, Thirumalaisamy P, Adegnika, Ayola Akim, Kremsner, Peter G, Lindesmith, Lisa C, Hué, Stéphane, Baric, Ralph S, Breuer, Judith, Vinjé, Jan
Published in Emerging infectious diseases (01.01.2024)
Published in Emerging infectious diseases (01.01.2024)
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Phylogenetic interpretation during outbreaks requires caution
Villabona-Arenas, Ch Julián, Hanage, William P, Tully, Damien C
Published in Nature microbiology (01.07.2020)
Published in Nature microbiology (01.07.2020)
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Evolutionary characteristics and genetic transmission patterns of predominant HIV-1 subtypes among men who have sex with men in China
Yuan, Huangbo, Liu, Zhenqiu, Wu, Xuefu, Wu, Mingshan, Fang, Qiwen, Tully, Damien C., Zhang, Tiejun
Published in International journal of infectious diseases (01.01.2020)
Published in International journal of infectious diseases (01.01.2020)
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Validation of dried blood spots for capturing hepatitis C virus diversity for genomic surveillance
Tully, Damien C., Power, Karen A., Sarette, Jacklyn, Stopka, Thomas J., Friedmann, Peter D., Korthuis, P. Todd, Cooper, Hannah, Young, April M., Seal, David W., Westergaard, Ryan P., Allen, Todd M.
Published in Journal of viral hepatitis (01.05.2024)
Published in Journal of viral hepatitis (01.05.2024)
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Hepatitis C Virus Transmission Clusters in Public Health and Correctional Settings, Wisconsin, USA, 2016-2017
Hochstatter, Karli R, Tully, Damien C, Power, Karen A, Koepke, Ruth, Akhtar, Wajiha Z, Prieve, Audrey F, Whyte, Thomas, Bean, David J, Seal, David W, Allen, Todd M, Westergaard, Ryan P
Published in Emerging infectious diseases (01.02.2021)
Published in Emerging infectious diseases (01.02.2021)
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Vaccine―induced CD8+ T cells control AIDS virus replication
MUDD, Philip A, MARTINS, Mauricio A, WEISGRAU, Kim L, FURLOTT, Jessica R, KIM, Young-Il, VELOSO DE SANTANA, Marlon G, RAKASZ, Eva, CAPUANO, Saverio, WILSON, Nancy A, BONALDO, Myrna C, GALLER, Ricardo, ALLISON, David B, ERICSEN, Adam J, PIATAK, Michael, HAASE, Ashley T, LIFSON, Jeffrey D, ALLEN, Todd M, WATKINS, David I, TULLY, Damien C, POWER, Karen A, BEAN, Alex T, PIASKOWSKI, Shari M, LIJIE DUAN, SEESE, Aaron, GLADDEN, Adrianne D
Published in Nature (London) (01.11.2012)
Published in Nature (London) (01.11.2012)
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Trace amounts of sporadically reappearing HCV RNA can cause infection
Veerapu, Naga Suresh, Park, Su-Hyung, Tully, Damien C, Allen, Todd M, Rehermann, Barbara
Published in The Journal of clinical investigation (01.08.2014)
Published in The Journal of clinical investigation (01.08.2014)
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Hepatitis C Virus Transmission Clusters in Public Health and Correctional Settings, Wisconsin, USA, 2016–20171
Hochstatter, Karli R., Tully, Damien C., Power, Karen A., Koepke, Ruth, Akhtar, Wajiha Z., Prieve, Audrey F., Whyte, Thomas, Bean, David J., Seal, David W., Allen, Todd M., Westergaard, Ryan P.
Published in Emerging infectious diseases (01.02.2021)
Published in Emerging infectious diseases (01.02.2021)
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Interferon-I: The Pièce de Résistance of HIV-1 Transmission?
Tully, Damien C, Claiborne, Daniel T, Allen, Todd M
Published in Trends in microbiology (Regular ed.) (01.05.2017)
Published in Trends in microbiology (Regular ed.) (01.05.2017)
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Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection
Piantadosi, Anne, Freije, Catherine A, Gosmann, Christina, Ye, Simon, Park, Daniel, Schaffner, Stephen F, Tully, Damien C, Allen, Todd M, Dong, Krista L, Sabeti, Pardis C, Kwon, Douglas S
Published in Journal of virology (15.01.2019)
Published in Journal of virology (15.01.2019)
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