Donor Clonal Hematopoiesis and Recipient Outcomes After Transplantation
Gibson, Christopher J, Kim, Haesook T, Zhao, Lin, Murdock, H Moses, Hambley, Bryan, Ogata, Alana, Madero-Marroquin, Rafael, Wang, Shiyu, Green, Lisa, Fleharty, Mark, Dougan, Tyler, Cheng, Chi-An, Blumenstiel, Brendan, Cibulskis, Carrie, Tsuji, Junko, Duran, Madeleine, Gocke, Christopher D, Antin, Joseph H, Nikiforow, Sarah, DeZern, Amy E, Chen, Yi-Bin, Ho, Vincent T, Jones, Richard J, Lennon, Niall J, Walt, David R, Ritz, Jerome, Soiffer, Robert J, Gondek, Lukasz P, Lindsley, R Coleman
Published in Journal of clinical oncology (10.01.2022)
Published in Journal of clinical oncology (10.01.2022)
Get full text
Journal Article
Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods
Zhang, Wen, Zhu, Xiaopeng, Fu, Yu, Tsuji, Junko, Weng, Zhiping
Published in BMC bioinformatics (01.12.2017)
Published in BMC bioinformatics (01.12.2017)
Get full text
Journal Article
Integrated miRNA-/mRNA-Seq of the Habenulo-Interpeduncular Circuit During Acute Nicotine Withdrawal
Casserly, Alison P, Tsuji, Junko, Zhao-Shea, Rubing, Smith, Ciearra B, Molas, Susanna, Tapper, Andrew R, Weng, Zhiping, Gardner, Paul D
Published in Scientific reports (21.01.2020)
Published in Scientific reports (21.01.2020)
Get full text
Journal Article
Annotation of chromatin states in 66 complete mouse epigenomes during development
van der Velde, Arjan, Fan, Kaili, Tsuji, Junko, Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Weng, Zhiping
Published in Communications biology (22.02.2021)
Published in Communications biology (22.02.2021)
Get full text
Journal Article
The Role of H3K4me3 in Transcriptional Regulation Is Altered in Huntington's Disease
Dong, Xianjun, Tsuji, Junko, Labadorf, Adam, Roussos, Panos, Chen, Jiang-Fan, Myers, Richard H, Akbarian, Schahram, Weng, Zhiping
Published in PloS one (04.12.2015)
Published in PloS one (04.12.2015)
Get full text
Journal Article
Somatic piRNAs and Transposons are Differentially Expressed Coincident with Skeletal Muscle Atrophy and Programmed Cell Death
Tsuji, Junko, Thomson, Travis, Brown, Christine, Ghosh, Subhanita, Theurkauf, William E, Weng, Zhiping, Schwartz, Lawrence M
Published in Frontiers in genetics (22.12.2021)
Published in Frontiers in genetics (22.12.2021)
Get full text
Journal Article
High-resolution analysis of differential gene expression during skeletal muscle atrophy and programmed cell death
Tsuji, Junko, Thomson, Travis, Chan, Elizabeth, Brown, Christine K, Oppenheimer, Julia, Bigelow, Carol, Dong, Xianjun, Theurkauf, William E, Weng, Zhiping, Schwartz, Lawrence M
Published in Physiological genomics (01.10.2020)
Published in Physiological genomics (01.10.2020)
Get full text
Journal Article
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Epstein, Charles B, Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A, Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L, Freese, Peter, Gorkin, David U, Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A, Mortazavi, Ali, Keller, Cheryl A, Zhang, Xiao-Ou, Elhajjajy, Shaimae I, Huey, Jack, Dickel, Diane E, Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B, Zhang, Jialing, Victorsen, Alec, White, Kevin P, Visel, Axel, Yeo, Gene W, Burge, Christopher B, Lécuyer, Eric, Gilbert, David M, Dekker, Job, Rinn, John, Mendenhall, Eric M, Ecker, Joseph R, Kellis, Manolis, Klein, Robert J, Noble, William S, Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J, Cherry, J Michael, Myers, Richard M, Ren, Bing, Graveley, Brenton R, Gerstein, Mark B, Pennacchio, Len A, Snyder, Michael P, Bernstein, Bradley E, Wold, Barbara, Hardison, Ross C, Gingeras, Thomas R, Stamatoyannopoulos, John A, Weng, Zhiping
Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
Get full text
Journal Article
Durvalumab plus tremelimumab alone or in combination with low-dose or hypofractionated radiotherapy in metastatic non-small-cell lung cancer refractory to previous PD(L)-1 therapy: an open-label, multicentre, randomised, phase 2 trial
Schoenfeld, Jonathan D, Giobbie-Hurder, Anita, Ranasinghe, Srinika, Kao, Katrina Z, Lako, Ana, Tsuji, Junko, Liu, Yang, Brennick, Ryan C, Gentzler, Ryan D, Lee, Carrie, Hubbard, Joleen, Arnold, Susanne M, Abbruzzese, James L, Jabbour, Salma K, Uboha, Nataliya V, Stephans, Kevin L, Johnson, Jennifer M, Park, Haeseong, Villaruz, Liza C, Sharon, Elad, Streicher, Howard, Ahmed, Mansoor M, Lyon, Hayley, Cibuskis, Carrie, Lennon, Niall, Jhaveri, Aashna, Yang, Lin, Altreuter, Jennifer, Gunasti, Lauren, Weirather, Jason L, Mak, Raymond H, Awad, Mark M, Rodig, Scott J, Chen, Helen X, Wu, Catherine J, Monjazeb, Arta M, Hodi, F Stephen
Published in The lancet oncology (01.02.2022)
Published in The lancet oncology (01.02.2022)
Get full text
Journal Article
Mammalian NUMT insertion is non-random
Tsuji, Junko, Frith, Martin C, Tomii, Kentaro, Horton, Paul
Published in Nucleic acids research (01.10.2012)
Published in Nucleic acids research (01.10.2012)
Get full text
Journal Article
Perspectives on ENCODE
Snyder, Michael P, Gingeras, Thomas R, Moore, Jill E, Weng, Zhiping, Gerstein, Mark B, Ren, Bing, Hardison, Ross C, Stamatoyannopoulos, John A, Graveley, Brenton R, Feingold, Elise A, Pazin, Michael J, Pagan, Michael, Gilchrist, Daniel A, Hitz, Benjamin C, Cherry, J Michael, Bernstein, Bradley E, Mendenhall, Eric M, Zerbino, Daniel R, Frankish, Adam, Flicek, Paul, Myers, Richard M
Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
Get full text
Journal Article
The PsychENCODE project
Akbarian, Schahram, Liu, Chunyu, Knowles, James A, Vaccarino, Flora M, Farnham, Peggy J, Crawford, Gregory E, Jaffe, Andrew E, Pinto, Dalila, Dracheva, Stella, Geschwind, Daniel H, Mill, Jonathan, Nairn, Angus C, Abyzov, Alexej, Pochareddy, Sirisha, Prabhakar, Shyam, Weissman, Sherman, Sullivan, Patrick F, State, Matthew W, Weng, Zhiping, Peters, Mette A, White, Kevin P, Gerstein, Mark B, Amiri, Anahita, Armoskus, Chris, Ashley-Koch, Allison E, Bae, Taejeong, Beckel-Mitchener, Andrea, Berman, Benjamin P, Coetzee, Gerhard A, Coppola, Gianfilippo, Francoeur, Nancy, Fromer, Menachem, Gao, Robert, Grennan, Kay, Herstein, Jennifer, Kavanagh, David H, Ivanov, Nikolay A, Jiang, Yan, Kitchen, Robert R, Kozlenkov, Alexey, Kundakovic, Marija, Li, Mingfeng, Li, Zhen, Liu, Shuang, Mangravite, Lara M, Mattei, Eugenio, Markenscoff-Papadimitriou, Eirene, Navarro, Fábio C P, North, Nicole, Omberg, Larsson, Panchision, David, Parikshak, Neelroop, Poschmann, Jeremie, Price, Amanda J, Purcaro, Michael, Reddy, Timothy E, Roussos, Panos, Schreiner, Shannon, Scuderi, Soraya, Sebra, Robert, Shibata, Mikihito, Shieh, Annie W, Skarica, Mario, Sun, Wenjie, Swarup, Vivek, Thomas, Amber, Tsuji, Junko, van Bakel, Harm, Wang, Daifeng, Wang, Yongjun, Wang, Kai, Werling, Donna M, Willsey, A Jeremy, Witt, Heather, Won, Hyejung, Wong, Chloe C Y, Wray, Gregory A, Wu, Emily Y, Xu, Xuming, Yao, Lijing, Senthil, Geetha, Lehner, Thomas, Sklar, Pamela, Sestan, Nenad
Published in Nature neuroscience (01.12.2015)
Published in Nature neuroscience (01.12.2015)
Get full text
Journal Article
Phase II Clinical Trial of Everolimus in a Pan-Cancer Cohort of Patients with mTOR Pathway Alterations
Adib, Elio, Klonowska, Katarzyna, Giannikou, Krinio, Do, Khanh T, Pruitt-Thompson, Solida, Bhushan, Ketki, Milstein, Matthew I, Hedglin, Jennifer, Kargus, Katherine E, Sholl, Lynette M, Tsuji, Junko, Hyman, David M, Sisk, Anne, Shapiro, Geoffrey I, Vargas, Hebert A, Harding, James J, Voss, Martin H, Iyer, Gopa, Kwiatkowski, David J
Published in Clinical cancer research (15.07.2021)
Published in Clinical cancer research (15.07.2021)
Get full text
Journal Article
Circulating tumor DNA and homologous recombination deficiency in bone-predominant mCRPC prior to radium-223 therapy
Yang, David Dewei, Huang, Jiaming, Crowdis, Jett, Riaz, Irbaz Bin, Rickles-Young, Micah, Tsuji, Junko, Cibulskis, Carrie, Fleharty, Mark, Whelpley, Bridget, Kelleher, Kaitlin, Fishman, Julie, Reardon, Brendan Michael, Park, Jihye, Huang, Franklin W., Van Allen, Eliezer Mendel, Choudhury, Atish Dipankar
Published in Journal of clinical oncology (20.02.2023)
Published in Journal of clinical oncology (20.02.2023)
Get full text
Journal Article
Single-Cell RNA-Sequencing of 370 Bone Marrow and Peripheral Blood Immune Cell Samples from Patients with MGUS and Smoldering Multiple Myeloma Reveal Significant Immune Dysregulation at the MGUS Stage, and Novel Interactions between Tumor and Immune Cells
Sklavenitis-Pistofidis, Romanos, Wu, Ting, Rahmat, Mahshid, Konishi, Yoshinobu, Lightbody, Elizabeth D., Timonian, Michael, Tsuji, Junko, Firer, Danielle T., Haradhvala, Nicholas J., Soekojo, Cinnie Yentia, Wang, Xiyue, Heilpern-Mallory, Daniel, Aguet, François, Getz, Gad, Ghobrial, Irene
Published in Blood (15.11.2022)
Published in Blood (15.11.2022)
Get full text
Journal Article
Cover Image
Giannikou, Krinio, Klonowska, Katarzyna, Tsuji, Junko, Wu, Shulin, Zhu, Zachary, Probst, Clemens K, Kao, Katrina Z, Wu, Chin‐Lee, Rodig, Scott, Marino‐Enriquez, Adrian, Zen, Yoh, Schaefer, Inga‐Marie, Kwiatkowski, David J
Published in Histopathology (01.10.2023)
Published in Histopathology (01.10.2023)
Get full text
Journal Article