Structural and functional characterization of G protein-coupled receptors with deep mutational scanning
Jones, Eric M, Lubock, Nathan B, Venkatakrishnan, A J, Wang, Jeffrey, Tseng, Alex M, Paggi, Joseph M, Latorraca, Naomi R, Cancilla, Daniel, Satyadi, Megan, Davis, Jessica E, Babu, M Madan, Dror, Ron O, Kosuri, Sriram
Published in eLife (21.10.2020)
Published in eLife (21.10.2020)
Get full text
Journal Article
Transcription factor expression defines subclasses of developing projection neurons highly similar to single-cell RNA-seq subtypes
Heavner, Whitney E., Ji, Shaoyi, Notwell, James H., Dyer, Ethan S., Tseng, Alex M., Birgmeier, Johannes, Yoo, Boyoung, Bejerano, Gill, McConnell, Susan K.
Published in Proceedings of the National Academy of Sciences - PNAS (06.10.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (06.10.2020)
Get full text
Journal Article
Congenital anemia reveals distinct targeting mechanisms for master transcription factor GATA1
Ludwig, Leif S., Lareau, Caleb A., Bao, Erik L., Liu, Nan, Utsugisawa, Taiju, Tseng, Alex M., Myers, Samuel A., Verboon, Jeffrey M., Ulirsch, Jacob C., Luo, Wendy, Muus, Christoph, Fiorini, Claudia, Olive, Meagan E., Vockley, Christopher M., Munschauer, Mathias, Hunter, Abigail, Ogura, Hiromi, Yamamoto, Toshiyuki, Inada, Hiroko, Nakagawa, Shinichiro, Ohzono, Shuichi, Subramanian, Vidya, Chiarle, Roberto, Glader, Bertil, Carr, Steven A., Aryee, Martin J., Kundaje, Anshul, Orkin, Stuart H., Regev, Aviv, McCavit, Timothy L., Kanno, Hitoshi, Sankaran, Vijay G.
Published in Blood (21.04.2022)
Published in Blood (21.04.2022)
Get full text
Journal Article
A mechanistically interpretable neural network for regulatory genomics
Tseng, Alex M, Eraslan, Gokcen, Biancalani, Tommaso, Scalia, Gabriele
Year of Publication 08.10.2024
Year of Publication 08.10.2024
Get full text
Journal Article
Complex Preferences for Different Convergent Priors in Discrete Graph Diffusion
Tseng, Alex M, Diamant, Nathaniel, Biancalani, Tommaso, Scalia, Gabriele
Year of Publication 05.06.2023
Year of Publication 05.06.2023
Get full text
Journal Article
GraphGUIDE: interpretable and controllable conditional graph generation with discrete Bernoulli diffusion
Tseng, Alex M, Diamant, Nathaniel, Biancalani, Tommaso, Scalia, Gabriele
Year of Publication 07.02.2023
Year of Publication 07.02.2023
Get full text
Journal Article
Feedback Efficient Online Fine-Tuning of Diffusion Models
Uehara, Masatoshi, Zhao, Yulai, Black, Kevin, Hajiramezanali, Ehsan, Scalia, Gabriele, Diamant, Nathaniel Lee, Tseng, Alex M, Levine, Sergey, Biancalani, Tommaso
Year of Publication 26.02.2024
Year of Publication 26.02.2024
Get full text
Journal Article
Fine-Tuning of Continuous-Time Diffusion Models as Entropy-Regularized Control
Uehara, Masatoshi, Zhao, Yulai, Black, Kevin, Hajiramezanali, Ehsan, Scalia, Gabriele, Diamant, Nathaniel Lee, Tseng, Alex M, Biancalani, Tommaso, Levine, Sergey
Year of Publication 23.02.2024
Year of Publication 23.02.2024
Get full text
Journal Article
Improving Graph Generation by Restricting Graph Bandwidth
Diamant, Nathaniel, Tseng, Alex M, Chuang, Kangway V, Biancalani, Tommaso, Scalia, Gabriele
Year of Publication 25.01.2023
Year of Publication 25.01.2023
Get full text
Journal Article
A mechanistically interpretable neural network for regulatory genomics
Tseng, Alex M, Eraslan, Gokcen, Biancalani, Tommaso, Scalia, Gabriele
Published in arXiv.org (08.10.2024)
Get full text
Published in arXiv.org (08.10.2024)
Paper
Improving Graph Generation by Restricting Graph Bandwidth
Diamant, Nathaniel, Tseng, Alex M, Chuang, Kangway V, Biancalani, Tommaso, Scalia, Gabriele
Published in arXiv.org (30.05.2023)
Get full text
Published in arXiv.org (30.05.2023)
Paper