Language models for the prediction of SARS-CoV-2 inhibitors
Blanchard, Andrew E, Gounley, John, Bhowmik, Debsindhu, Chandra Shekar, Mayanka, Lyngaas, Isaac, Gao, Shang, Yin, Junqi, Tsaris, Aristeidis, Wang, Feiyi, Glaser, Jens
Published in The international journal of high performance computing applications (01.11.2022)
Published in The international journal of high performance computing applications (01.11.2022)
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Journal Article
Comparative evaluation of deep learning workloads for leadership-class systems
Yin, Junqi, Tsaris, Aristeidis, Dash, Sajal, Miller, Ross, Wang, Feiyi, Shankar, Mallikarjun (Arjun)
Published in BenchCouncil Transactions on Benchmarks, Standards and Evaluations (01.10.2021)
Published in BenchCouncil Transactions on Benchmarks, Standards and Evaluations (01.10.2021)
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Journal Article
Conference Proceeding
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action
Trifan, Anda, Gorgun, Defne, Salim, Michael, Li, Zongyi, Brace, Alexander, Zvyagin, Maxim, Ma, Heng, Clyde, Austin, Clark, David, Hardy, David J, Burnley, Tom, Huang, Lei, McCalpin, John, Emani, Murali, Yoo, Hyenseung, Yin, Junqi, Tsaris, Aristeidis, Subbiah, Vishal, Raza, Tanveer, Liu, Jessica, Trebesch, Noah, Wells, Geoffrey, Mysore, Venkatesh, Gibbs, Thomas, Phillips, James, Chennubhotla, S Chakra, Foster, Ian, Stevens, Rick, Anandkumar, Anima, Vishwanath, Venkatram, Stone, John E, Tajkhorshid, Emad, A Harris, Sarah, Ramanathan, Arvind
Published in The international journal of high performance computing applications (01.11.2022)
Published in The international journal of high performance computing applications (01.11.2022)
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Journal Article
The HEP.TrkX Project: deep neural networks for HL-LHC online and offline tracking
Farrell, Steven, Anderson, Dustin, Calafiura, Paolo, Cerati, Giuseppe, Gray, Lindsey, Kowalkowski, Jim, Mudigonda, Mayur, Prabhat, Spentzouris, Panagiotis, Spiropoulou, Maria, Tsaris, Aristeidis, Vlimant, Jean-Roch, Zheng, Stephan
Published in EPJ Web of Conferences (01.01.2017)
Published in EPJ Web of Conferences (01.01.2017)
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Journal Article
Conference Proceeding
Efficient Memory Storage and Linear Parallel Scaling for Large-Scale Electron Ptychography
Wang, Xiao, Mukherjee, Debangshu, Tsaris, Aristeidis, Oxley, Mark, Ovchinnikova, Olga, Hinkle, Jacob
Published in Microscopy and microanalysis (01.08.2022)
Published in Microscopy and microanalysis (01.08.2022)
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Journal Article
Conference Proceeding
FPGA-Accelerated Machine Learning Inference as a Service for Particle Physics Computing
Duarte, Javier, Harris, Philip, Hauck, Scott, Holzman, Burt, Hsu, Shih-Chieh, Jindariani, Sergo, Khan, Suffian, Kreis, Benjamin, Lee, Brian, Liu, Mia, Lončar, Vladimir, Ngadiuba, Jennifer, Pedro, Kevin, Perez, Brandon, Pierini, Maurizio, Rankin, Dylan, Tran, Nhan, Trahms, Matthew, Tsaris, Aristeidis, Versteeg, Colin, Way, Ted W., Werran, Dustin, Wu, Zhenbin
Published in Computing and software for big science (01.12.2019)
Published in Computing and software for big science (01.12.2019)
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Journal Article
The HEP.TrkX Project: Deep Learning for Particle Tracking
Tsaris, Aristeidis, Anderson, Dustin, Bendavid, Josh, Calafiura, Paolo, Cerati, Giuseppe, Esseiva, Julien, Farrell, Steven, Gray, Lindsey, Kapoor, Keshav, Kowalkowski, Jim, Mudigonda, Mayur, Prabhat, Spentzouris, Panagiotis, Spiropoulou, Maria, Vlimant, Jean-Roch, Zheng, Stephan, Zurawski, Daniel
Published in Journal of physics. Conference series (01.09.2018)
Published in Journal of physics. Conference series (01.09.2018)
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Journal Article
Scidac-Data: Enabling Data Driven Modeling of Exascale Computing
Mubarak, Misbah, Ding, Pengfei, Aliaga, Leo, Tsaris, Aristeidis, Norman, Andrew, Lyon, Adam, Ross, Robert
Published in Journal of physics. Conference series (01.10.2017)
Published in Journal of physics. Conference series (01.10.2017)
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Journal Article
Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19
Acharya, Atanu, Agarwal, Rupesh, Baker, M. B., Baudry, Jerome Y., Bhowmik, Debsindhu, Boehm, Swen, Byler, Kendall G., Chen, S. Y., Coates, Leighton, Cooper, Connor J., Demerdash, Omar N., Daidone, Isabella, Eblen, John D., Ellingson, Sally R., Forli, Stefano, Glaser, Jens, Gumbart, James C., Gunnels, John, Hernandez, Oscar, Irle, Stephan, Kneller, Daniel W., Kovalevsky, Andrii Y., Larkin, Jeffrey, Lawrence, Travis J., LeGrand, Scott, Liu, S.-H. Kevin, Mitchell, Julie C., Park, Gilchan, Parks, Jerry M., Pavlova, Anna, Petridis, Loukas, Poole, Duncan, Pouchard, Line, Ramanathan, Arvind, Rogers, David M., Santos-Martins, Diogo, Scheinberg, Aaron, Sedova, Ada, Shen, Yue, Smith, Jeremy C., Smith, Micholas D., Soto, Carlos, Tsaris, Aristeidis, Thavappiragasam, Mathialakan, Tillack, Andreas F., Vermaas, Josh V., Vuong, Van Quan, Yin, Junqi, Yoo, Shinjae, Zahran, Mai, Zanetti-Polzi, Laura
Published in Journal of chemical information and modeling (16.12.2020)
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Published in Journal of chemical information and modeling (16.12.2020)
Journal Article
Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19
Acharya, Atanu, Agarwal, Rupesh, Baker, M. B., Baudry, Jerome Y., Bhowmik, Debsindhu, Boehm, Swen, Byler, Kendall G., Chen, S. Y., Coates, Leighton, Cooper, Connor J., Demerdash, Omar, Daidone, Isabella, Eblen, John D., Ellingson, Sally R., Forli, Stefano, Glaser, Jens, Gumbart, James C., Gunnels, John, Hernandez, Oscar, Irle, Stephan, Kneller, Daniel W., Kovalevsky, Andrii Y., Larkin, Jeffrey, Lawrence, Travis J., LeGrand, Scott, Liu, S.-H. Kevin, Mitchell, Julie C., Park, Gilchan, Parks, Jerry M., Pavlova, Anna, Petridis, Loukas, Poole, Duncan, Pouchard, Line, Ramanathan, Arvind, Rogers, David M., Santos-Martins, Diogo, Scheinberg, Aaron, Sedova, Ada, Shen, Yue, Smith, Jeremy C., Smith, Micholas D., Soto, Carlos, Tsaris, Aristeidis, Thavappiragasam, Mathialakan, Tillack, Andreas F., Vermaas, Josh V., Vuong, Van Quan, Yin, Junqi, Yoo, Shinjae, Zahran, Mai, Zanetti-Polzi, Laura
Published in Journal of chemical information and modeling (16.12.2020)
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Published in Journal of chemical information and modeling (16.12.2020)
Journal Article
AI Benchmarking for Science: Efforts from the MLCommons Science Working Group
Thiyagalingam, Jeyan, von Laszewski, Gregor, Yin, Junqi, Emani, Murali, Papay, Juri, Barrett, Gregg, Luszczek, Piotr, Tsaris, Aristeidis, Kirkpatrick, Christine, Wang, Feiyi, Gibbs, Tom, Vishwanath, Venkatram, Shankar, Mallikarjun, Fox, Geoffrey, Hey, Tony
Published in High Performance Computing. ISC High Performance 2022 International Workshops
Published in High Performance Computing. ISC High Performance 2022 International Workshops
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Book Chapter
Scalable Artificial Intelligence for Science: Perspectives, Methods and Exemplars
Brewer, Wesley, Kashi, Aditya, Dash, Sajal, Tsaris, Aristeidis, Yin, Junqi, Shankar, Mallikarjun, Wang, Feiyi
Published in arXiv.org (24.06.2024)
Published in arXiv.org (24.06.2024)
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Paper
Journal Article
Pretraining Billion-Scale Geospatial Foundational Models on Frontier
Tsaris, Aristeidis, Dias, Philipe Ambrozio, Potnis, Abhishek, Yin, Junqi, Wang, Feiyi, Lunga, Dalton
Published in 2024 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (27.05.2024)
Published in 2024 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (27.05.2024)
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Conference Proceeding
Distributed Training for High Resolution Images: A Domain and Spatial Decomposition Approach
Tsaris, Aristeidis, Hinkle, Jacob, Lunga, Dalton, Dias, Philipe Ambrozio
Published in 2021 IEEE/ACM Redefining Scalability for Diversely Heterogeneous Architectures Workshop (RSDHA) (01.11.2021)
Published in 2021 IEEE/ACM Redefining Scalability for Diversely Heterogeneous Architectures Workshop (RSDHA) (01.11.2021)
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Conference Proceeding
An Agenda for Multimodal Foundation Models for Earth Observation
Dias, Philipe, Potnis, Abhishek, Guggilam, Sreelekha, Yang, Lexie, Tsaris, Aristeidis, Medeiros, Henry, Lunga, Dalton
Published in IGARSS 2023 - 2023 IEEE International Geoscience and Remote Sensing Symposium (16.07.2023)
Published in IGARSS 2023 - 2023 IEEE International Geoscience and Remote Sensing Symposium (16.07.2023)
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Conference Proceeding
Image Gradient Decomposition for Parallel and Memory-Efficient Ptychographic Reconstruction
Wang, Xiao, Tsaris, Aristeidis, Mukherjee, Debangshu, Wahib, Mohamed, Chen, Peng, Oxley, Mark, Ovchinnikova, Olga, Hinkle, Jacob
Published in SC22: International Conference for High Performance Computing, Networking, Storage and Analysis (01.11.2022)
Published in SC22: International Conference for High Performance Computing, Networking, Storage and Analysis (01.11.2022)
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Conference Proceeding
Image Gradient Decomposition for Parallel and Memory-Efficient Ptychographic Reconstruction
Wang, Xiao, Tsaris, Aristeidis, Mukherjee, Debangshu, Wahib, Mohamed, Chen, Peng, Oxley, Mark, Ovchinnikova, Olga, Hinkle, Jacob
Published in arXiv.org (16.12.2022)
Published in arXiv.org (16.12.2022)
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Journal Article