High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
Daccord, Nicolas, Celton, Jean-Marc, Linsmith, Gareth, Becker, Claude, Choisne, Nathalie, Schijlen, Elio, van de Geest, Henri, Bianco, Luca, Micheletti, Diego, Velasco, Riccardo, Di Pierro, Erica Adele, Gouzy, Jérôme, Rees, D Jasper G, Guérif, Philippe, Muranty, Hélène, Durel, Charles-Eric, Laurens, François, Lespinasse, Yves, Gaillard, Sylvain, Aubourg, Sébastien, Quesneville, Hadi, Weigel, Detlef, van de Weg, Eric, Troggio, Michela, Bucher, Etienne
Published in Nature genetics (01.07.2017)
Published in Nature genetics (01.07.2017)
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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
Verde, Ignazio, Jenkins, Jerry, Dondini, Luca, Micali, Sabrina, Pagliarani, Giulia, Vendramin, Elisa, Paris, Roberta, Aramini, Valeria, Gazza, Laura, Rossini, Laura, Bassi, Daniele, Troggio, Michela, Shu, Shengqiang, Grimwood, Jane, Tartarini, Stefano, Dettori, Maria Teresa, Schmutz, Jeremy
Published in BMC genomics (11.03.2017)
Published in BMC genomics (11.03.2017)
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Development and validation of the Axiom®Apple480K SNP genotyping array
Bianco, Luca, Cestaro, Alessandro, Linsmith, Gareth, Muranty, Hélène, Denancé, Caroline, Théron, Anthony, Poncet, Charles, Micheletti, Diego, Kerschbamer, Emanuela, Di Pierro, Erica A., Larger, Simone, Pindo, Massimo, Van de Weg, Eric, Davassi, Alessandro, Laurens, François, Velasco, Riccardo, Durel, Charles‐Eric, Troggio, Michela
Published in The Plant journal : for cell and molecular biology (01.04.2016)
Published in The Plant journal : for cell and molecular biology (01.04.2016)
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Journal Article
Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh)
Bianco, Luca, Cestaro, Alessandro, Sargent, Daniel James, Banchi, Elisa, Derdak, Sophia, Di Guardo, Mario, Salvi, Silvio, Jansen, Johannes, Viola, Roberto, Gut, Ivo, Laurens, Francois, Chagné, David, Velasco, Riccardo, van de Weg, Eric, Troggio, Michela
Published in PloS one (10.10.2014)
Published in PloS one (10.10.2014)
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Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape
Emanuelli, Francesco, Lorenzi, Silvia, Grzeskowiak, Lukasz, Catalano, Valentina, Stefanini, Marco, Troggio, Michela, Myles, Sean, Martinez-Zapater, José M, Zyprian, Eva, Moreira, Flavia M, Grando, M Stella
Published in BMC plant biology (07.03.2013)
Published in BMC plant biology (07.03.2013)
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Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm
Muranty, Hélène, Denancé, Caroline, Feugey, Laurence, Crépin, Jean-Luc, Barbier, Yves, Tartarini, Stefano, Ordidge, Matthew, Troggio, Michela, Lateur, Marc, Nybom, Hilde, Paprstein, Frantisek, Laurens, François, Durel, Charles-Eric
Published in BMC plant biology (02.01.2020)
Published in BMC plant biology (02.01.2020)
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Journal Article
The draft genome sequence of European pear (Pyrus communis L. 'Bartlett')
Chagné, David, Crowhurst, Ross N, Pindo, Massimo, Thrimawithana, Amali, Deng, Cecilia, Ireland, Hilary, Fiers, Mark, Dzierzon, Helge, Cestaro, Alessandro, Fontana, Paolo, Bianco, Luca, Lu, Ashley, Storey, Roy, Knäbel, Mareike, Saeed, Munazza, Montanari, Sara, Kim, Yoon Kyeong, Nicolini, Daniela, Larger, Simone, Stefani, Erika, Allan, Andrew C, Bowen, Judith, Harvey, Isaac, Johnston, Jason, Malnoy, Mickael, Troggio, Michela, Perchepied, Laure, Sawyer, Greg, Wiedow, Claudia, Won, Kyungho, Viola, Roberto, Hellens, Roger P, Brewer, Lester, Bus, Vincent G M, Schaffer, Robert J, Gardiner, Susan E, Velasco, Riccardo
Published in PloS one (03.04.2014)
Published in PloS one (03.04.2014)
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Journal Article
The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.)
Guardo, Mario Di, Moretto, Marco, Moser, Mirko, Catalano, Chiara, Troggio, Michela, Deng, Ziniu, Cestaro, Alessandro, Caruso, Marco, Distefano, Gaetano, Malfa, Stefano La, Bianco, Luca, Gentile, Alessandra
Published in Tree genetics & genomes (01.12.2021)
Published in Tree genetics & genomes (01.12.2021)
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Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
Jung, Sook, Cestaro, Alessandro, Troggio, Michela, Main, Dorrie, Zheng, Ping, Cho, Ilhyung, Folta, Kevin M, Sosinski, Bryon, Abbott, Albert, Celton, Jean-Marc, Arús, Pere, Shulaev, Vladimir, Verde, Ignazio, Morgante, Michele, Rokhsar, Daniel, Velasco, Riccardo, Sargent, Daniel James
Published in BMC genomics (04.04.2012)
Published in BMC genomics (04.04.2012)
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Integration of Infinium and Axiom SNP array data in the outcrossing species Malus × domestica and causes for seemingly incompatible calls
Howard, Nicholas P, Troggio, Michela, Durel, Charles-Eric, Muranty, Hélène, Denancé, Caroline, Bianco, Luca, Tillman, John, van de Weg, Eric
Published in BMC genomics (07.04.2021)
Published in BMC genomics (07.04.2021)
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Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm
Verde, Ignazio, Bassil, Nahla, Scalabrin, Simone, Gilmore, Barbara, Lawley, Cynthia T, Gasic, Ksenija, Micheletti, Diego, Rosyara, Umesh R, Cattonaro, Federica, Vendramin, Elisa, Main, Dorrie, Aramini, Valeria, Blas, Andrea L, Mockler, Todd C, Bryant, Douglas W, Wilhelm, Larry, Troggio, Michela, Sosinski, Bryon, Aranzana, Maria José, Arús, Pere, Iezzoni, Amy, Morgante, Michele, Peace, Cameron, Wu, Rongling
Published in PloS one (20.04.2012)
Published in PloS one (20.04.2012)
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QTL analysis on a lemon population provides novel insights on the genetic regulation of the tolerance to the two-spotted spider mite attack
Catalano, Chiara, Di Guardo, Mario, Licciardello, Giuliana, Seminara, Sebastiano, Tropea Garzia, Giovanna, Biondi, Antonio, Troggio, Michela, Bianco, Luca, La Malfa, Stefano, Gentile, Alessandra, Distefano, Gaetano
Published in BMC plant biology (07.06.2024)
Published in BMC plant biology (07.06.2024)
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Journal Article
Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple
Chagné, David, Crowhurst, Ross N, Troggio, Michela, Davey, Mark W, Gilmore, Barbara, Lawley, Cindy, Vanderzande, Stijn, Hellens, Roger P, Kumar, Satish, Cestaro, Alessandro, Velasco, Riccardo, Main, Dorrie, Rees, Jasper D, Iezzoni, Amy, Mockler, Todd, Wilhelm, Larry, Van de Weg, Eric, Gardiner, Susan E, Bassil, Nahla, Peace, Cameron, Bendahmane, Mohammed
Published in PloS one (21.02.2012)
Published in PloS one (21.02.2012)
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Journal Article
A new genomic tool for walnut (Juglans regia L.): development and validation of the high‐density Axiom™ J. regia 700K SNP genotyping array
Marrano, Annarita, Martínez‐García, Pedro J., Bianco, Luca, Sideli, Gina M., Di Pierro, Erica A., Leslie, Charles A., Stevens, Kristian A., Crepeau, Marc W., Troggio, Michela, Langley, Charles H., Neale, David B.
Published in Plant biotechnology journal (01.06.2019)
Published in Plant biotechnology journal (01.06.2019)
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Journal Article
High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome
Marrano, Annarita, Britton, Monica, Zaini, Paulo A, Zimin, Aleksey V, Workman, Rachael E, Puiu, Daniela, Bianco, Luca, Pierro, Erica Adele Di, Allen, Brian J, Chakraborty, Sandeep, Troggio, Michela, Leslie, Charles A, Timp, Winston, Dandekar, Abhaya, Salzberg, Steven L, Neale, David B
Published in Gigascience (01.05.2020)
Published in Gigascience (01.05.2020)
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Journal Article
Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array
Antanaviciute, Laima, Fernández-Fernández, Felicidad, Jansen, Johannes, Banchi, Elisa, Evans, Katherine M, Viola, Roberto, Velasco, Riccardo, Dunwell, Jim M, Troggio, Michela, Sargent, Daniel J
Published in BMC genomics (25.05.2012)
Published in BMC genomics (25.05.2012)
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Journal Article
Whole-Genome Analysis of Diversity and SNP-Major Gene Association in Peach Germplasm
Micheletti, Diego, Dettori, Maria Teresa, Micali, Sabrina, Aramini, Valeria, Pacheco, Igor, Da Silva Linge, Cassia, Foschi, Stefano, Banchi, Elisa, Barreneche, Teresa, Quilot-Turion, Bénédicte, Lambert, Patrick, Pascal, Thierry, Iglesias, Ignasi, Carbó, Joaquim, Wang, Li-Rong, Ma, Rui-Juan, Li, Xiong-Wei, Gao, Zhong-Shan, Nazzicari, Nelson, Troggio, Michela, Bassi, Daniele, Rossini, Laura, Verde, Ignazio, Laurens, François, Arús, Pere, Aranzana, Maria José
Published in PloS one (09.09.2015)
Published in PloS one (09.09.2015)
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Journal Article
Epistatic fire blight resistance QTL alleles in the apple cultivar ‘Enterprise’ and selection X-6398 discovered and characterized through pedigree-informed analysis
van de Weg, Eric, Di Guardo, Mario, Jänsch, Melanie, Socquet-Juglard, Didier, Costa, Fabrizio, Baumgartner, Isabelle, Broggini, Giovanni A. L., Kellerhals, Markus, Troggio, Michela, Laurens, François, Durel, Charles-Eric, Patocchi, Andrea
Published in Molecular breeding (01.01.2018)
Published in Molecular breeding (01.01.2018)
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Journal Article
Apple whole genome sequences: recent advances and new prospects
Peace, Cameron P, Bianco, Luca, Troggio, Michela, van de Weg, Eric, Howard, Nicholas P, Cornille, Amandine, Durel, Charles-Eric, Myles, Sean, Migicovsky, Zoë, Schaffer, Robert J, Costes, Evelyne, Fazio, Gennaro, Yamane, Hisayo, van Nocker, Steve, Gottschalk, Chris, Costa, Fabrizio, Chagné, David, Zhang, Xinzhong, Patocchi, Andrea, Gardiner, Susan E, Hardner, Craig, Kumar, Satish, Laurens, Francois, Bucher, Etienne, Main, Dorrie, Jung, Sook, Vanderzande, Stijn
Published in Horticulture research (2019)
Published in Horticulture research (2019)
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Journal Article
Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization
Montanari, Sara, Bianco, Luca, Allen, Brian J, Martínez-García, Pedro J, Bassil, Nahla V, Postman, Joseph, Knäbel, Mareike, Kitson, Biff, Deng, Cecilia H, Chagné, David, Crepeau, Marc W, Langley, Charles H, Evans, Kate, Dhingra, Amit, Troggio, Michela, Neale, David B
Published in BMC genomics (02.05.2019)
Published in BMC genomics (02.05.2019)
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