Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases
Weeks, Elle M., Ulirsch, Jacob C., Cheng, Nathan Y., Trippe, Brian L., Fine, Rebecca S., Miao, Jenkai, Patwardhan, Tejal A., Kanai, Masahiro, Nasser, Joseph, Fulco, Charles P., Tashman, Katherine C., Aguet, Francois, Li, Taibo, Ordovas-Montanes, Jose, Smillie, Christopher S., Biton, Moshe, Shalek, Alex K., Ananthakrishnan, Ashwin N., Xavier, Ramnik J., Regev, Aviv, Gupta, Rajat M., Lage, Kasper, Ardlie, Kristin G., Hirschhorn, Joel N., Lander, Eric S., Engreitz, Jesse M., Finucane, Hilary K.
Published in Nature genetics (01.08.2023)
Published in Nature genetics (01.08.2023)
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Journal Article
De novo design of protein structure and function with RFdiffusion
Watson, Joseph L., Juergens, David, Bennett, Nathaniel R., Trippe, Brian L., Yim, Jason, Eisenach, Helen E., Ahern, Woody, Borst, Andrew J., Ragotte, Robert J., Milles, Lukas F., Wicky, Basile I. M., Hanikel, Nikita, Pellock, Samuel J., Courbet, Alexis, Sheffler, William, Wang, Jue, Venkatesh, Preetham, Sappington, Isaac, Torres, Susana Vázquez, Lauko, Anna, De Bortoli, Valentin, Mathieu, Emile, Ovchinnikov, Sergey, Barzilay, Regina, Jaakkola, Tommi S., DiMaio, Frank, Baek, Minkyung, Baker, David
Published in Nature (London) (31.08.2023)
Published in Nature (London) (31.08.2023)
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Journal Article
Confidently Comparing Estimates with the c-value
Trippe, Brian L., Deshpande, Sameer K., Broderick, Tamara
Published in Journal of the American Statistical Association (02.04.2024)
Published in Journal of the American Statistical Association (02.04.2024)
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Journal Article
Randomized gates eliminate bias in sort‐seq assays
Trippe, Brian L., Huang, Buwei, DeBenedictis, Erika A., Coventry, Brian, Bhattacharya, Nicholas, Yang, Kevin K., Baker, David, Crawford, Lorin
Published in Protein science (01.09.2022)
Published in Protein science (01.09.2022)
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Journal Article
Practical and Asymptotically Exact Conditional Sampling in Diffusion Models
Wu, Luhuan, Trippe, Brian L, Naesseth, Christian A, Blei, David M, Cunningham, John P
Year of Publication 30.06.2023
Year of Publication 30.06.2023
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Journal Article
SE(3) diffusion model with application to protein backbone generation
Yim, Jason, Trippe, Brian L, De Bortoli, Valentin, Mathieu, Emile, Doucet, Arnaud, Barzilay, Regina, Jaakkola, Tommi
Year of Publication 04.02.2023
Year of Publication 04.02.2023
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Journal Article
Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem
Trippe, Brian L, Yim, Jason, Tischer, Doug, Baker, David, Broderick, Tamara, Barzilay, Regina, Jaakkola, Tommi
Year of Publication 08.06.2022
Year of Publication 08.06.2022
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Journal Article
Gaussian processes at the Helm(holtz): A more fluid model for ocean currents
Berlinghieri, Renato, Trippe, Brian L, Burt, David R, Giordano, Ryan, Srinivasan, Kaushik, Özgökmen, Tamay, Xia, Junfei, Broderick, Tamara
Year of Publication 20.02.2023
Year of Publication 20.02.2023
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Journal Article
LR-GLM: High-Dimensional Bayesian Inference Using Low-Rank Data Approximations
Trippe, Brian L, Huggins, Jonathan H, Agrawal, Raj, Broderick, Tamara
Year of Publication 17.05.2019
Year of Publication 17.05.2019
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Journal Article