A molecular cell atlas of the human lung from single-cell RNA sequencing
Travaglini, Kyle J., Nabhan, Ahmad N., Penland, Lolita, Sinha, Rahul, Gillich, Astrid, Sit, Rene V., Chang, Stephen, Conley, Stephanie D., Mori, Yasuo, Seita, Jun, Berry, Gerald J., Shrager, Joseph B., Metzger, Ross J., Kuo, Christin S., Neff, Norma, Weissman, Irving L., Quake, Stephen R., Krasnow, Mark A.
Published in Nature (London) (26.11.2020)
Published in Nature (London) (26.11.2020)
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Comparative genetic screens in human cells reveal new regulatory mechanisms in WNT signaling
Lebensohn, Andres M, Dubey, Ramin, Neitzel, Leif R, Tacchelly-Benites, Ofelia, Yang, Eungi, Marceau, Caleb D, Davis, Eric M, Patel, Bhaven B, Bahrami-Nejad, Zahra, Travaglini, Kyle J, Ahmed, Yashi, Lee, Ethan, Carette, Jan E, Rohatgi, Rajat
Published in eLife (20.12.2016)
Published in eLife (20.12.2016)
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Capillary cell-type specialization in the alveolus
Gillich, Astrid, Zhang, Fan, Farmer, Colleen G., Travaglini, Kyle J., Tan, Serena Y., Gu, Mingxia, Zhou, Bin, Feinstein, Jeffrey A., Krasnow, Mark A., Metzger, Ross J.
Published in Nature (London) (29.10.2020)
Published in Nature (London) (29.10.2020)
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Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung
Wu, Timothy Ting-Hsuan, Travaglini, Kyle J, Rustagi, Arjun, Xu, Duo, Zhang, Yue, Andronov, Leonid, Jang, SoRi, Gillich, Astrid, Dehghannasiri, Roozbeh, Martínez-Colón, Giovanny J, Beck, Aimee, Liu, Daniel Dan, Wilk, Aaron J, Morri, Maurizio, Trope, Winston L, Bierman, Rob, Weissman, Irving L, Shrager, Joseph B, Quake, Stephen R, Kuo, Christin S, Salzman, Julia, Moerner, W E, Kim, Peter S, Blish, Catherine A, Krasnow, Mark A
Published in The Journal of experimental medicine (03.06.2024)
Published in The Journal of experimental medicine (03.06.2024)
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Transcriptomic cytoarchitecture reveals principles of human neocortex organization
Jorstad, Nikolas L, Close, Jennie, Johansen, Nelson, Yanny, Anna Marie, Barkan, Eliza R, Travaglini, Kyle J, Bertagnolli, Darren, Campos, Jazmin, Casper, Tamara, Crichton, Kirsten, Dee, Nick, Ding, Song-Lin, Gelfand, Emily, Goldy, Jeff, Hirschstein, Daniel, Kiick, Katelyn, Kroll, Matthew, Kunst, Michael, Lathia, Kanan, Long, Brian, Martin, Naomi, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Ruiz, Augustin, Shapovalova, Nadiya, Shehata, Soraya, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Callaway, Edward M, Hof, Patrick R, Keene, C Dirk, Levi, Boaz P, Linnarsson, Sten, Mitra, Partha P, Smith, Kimberly, Hodge, Rebecca D, Bakken, Trygve E, Lein, Ed S
Published in Science (American Association for the Advancement of Science) (13.10.2023)
Published in Science (American Association for the Advancement of Science) (13.10.2023)
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Interindividual variation in human cortical cell type abundance and expression
Johansen, Nelson, Somasundaram, Saroja, Travaglini, Kyle J, Yanny, Anna Marie, Shumyatcher, Maya, Casper, Tamara, Cobbs, Charles, Dee, Nick, Ellenbogen, Richard, Ferreira, Manuel, Goldy, Jeff, Guzman, Junitta, Gwinn, Ryder, Hirschstein, Daniel, Jorstad, Nikolas L, Keene, C Dirk, Ko, Andrew, Levi, Boaz P, Ojemann, Jeffrey G, Pham, Thanh, Shapovalova, Nadiya, Silbergeld, Daniel, Sulc, Josef, Torkelson, Amy, Tung, Herman, Smith, Kimberly, Lein, Ed S, Bakken, Trygve E, Hodge, Rebecca D, Miller, Jeremy A
Published in Science (American Association for the Advancement of Science) (13.10.2023)
Published in Science (American Association for the Advancement of Science) (13.10.2023)
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Dissecting alveolar patterning and maintenance at single-cell resolution
Gillich, Astrid, Brownfield, Douglas G, Travaglini, Kyle J, Zhang, Fan, Farmer, Colleen G, St Julien, Krystal R, Tan, Serena Y, Gu, Mingxia, Zhou, Bin, Feinstein, Jeffrey A, Metzger, Ross J, Krasnow, Mark A
Published in The FASEB journal (01.05.2022)
Published in The FASEB journal (01.05.2022)
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A multimodal atlas of the molecular and cellular changes to cortex driven by Alzheimer’s disease
Travaglini, Kyle J, Gabitto, Mariano, Ding, Yi, Ariza, Jeanelle, Chakrabarty, Rushil, Crane, Paul K., Ferrer, Rebecca, Goldy, Jeff, Grabowski, Thomas J, Guilford, Nathan, Guzman, Junitta, Hawrylycz, Michael J, Hodge, Rebecca D, Jayadev, Suman, Kaplan, Eitan S, Keene, C Dirk, Larson, Eric B, Latimer, Caitlin S, Levi, Boaz, Mahoney, Joseph, Melief, Erica J, Mukherjee, Shubhabrata, Pham, Thanh, Rachleff, Victoria M, Smith, Kimberly A, Torkelson, Amy, Lein, Ed S, Miller, Jeremy A
Published in Alzheimer's & dementia (01.12.2022)
Published in Alzheimer's & dementia (01.12.2022)
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SEA-AD is a multimodal cellular atlas and resource for Alzheimer's disease
Hawrylycz, Michael, Kaplan, Eitan S, Travaglini, Kyle J, Gabitto, Mariano I, Miller, Jeremy A, Ng, Lydia, Close, Jennie L, Hodge, Rebecca D, Long, Brian, Mollenkopf, Tyler, Mufti, Shoaib, Gatto, Nicole M, Larson, Eric B, Crane, Paul K, Grabowski, Thomas J, Keene, C Dirk, Lein, Ed S
Published in Nature aging (01.10.2024)
Published in Nature aging (01.10.2024)
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A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Almanzar, Nicole, Antony, Jane, Baghel, Ankit S, Bakerman, Isaac, Bansal, Ishita, Barres, Ben A, Beachy, Philip A
Published in Nature (London) (23.07.2020)
Published in Nature (London) (23.07.2020)
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Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
Schaum, Nicholas, Karkanias, Jim, Neff, Norma F., May, Andrew P., Quake, Stephen R., Wyss-Coray, Tony, Darmanis, Spyros, Batson, Joshua, Botvinnik, Olga, Chen, Michelle B., Chen, Steven, Green, Foad, Jones, Robert, Maynard, Ashley, Penland, Lolita, Pisco, Angela Oliveira, Sit, Rene V., Stanley, Geoffrey M., Webber, James T., Zanini, Fabio, Baghel, Ankit S, Bakerman, Isaac, Bansal, Ishita, Berdnik, Daniela, Bilen, Biter, Brownfield, Douglas, Cain, Corey, Cho, Min, Cirolia, Giana, Conley, Stephanie D., Darmanis, Spyros, Demers, Aaron, Demir, Kubilay, de Morree, Antoine, Divita, Tessa, du Bois, Haley, Dulgeroff, Laughing Bear Torrez, Ebadi, Hamid, Espinoza, F. Hernán, Fish, Matt, Gan, Qiang, George, Benson M., Gillich, Astrid, Genetiano, Geraldine, Gu, Xueying, Gulati, Gunsagar S., Hang, Yan, Hosseinzadeh, Shayan, Huang, Albin, Iram, Tal, Isobe, Taichi, Ives, Feather, Kao, Kevin S., Karnam, Guruswamy, Kershner, Aaron M., Kiss, Bernhard M., Kong, William, Kumar, Maya E., Lam, Jonathan, Lee, Davis P., Lee, Song E., Li, Guang, Li, Qingyun, Liu, Ling, Lo, Annie, Lu, Wan-Jin, Manjunath, Anoop, May, Kaia L., May, Oliver L., McKay, Marina, Metzger, Ross J., Mignardi, Marco, Min, Dullei, Nabhan, Ahmad N., Ng, Katharine M., Noh, Joseph, Patkar, Rasika, Peng, Weng Chuan, Puccinelli, Robert, Rulifson, Eric J., Sikandar, Shaheen S., Sinha, Rahul, Szade, Krzysztof, Tan, Weilun, Tato, Cristina, Tellez, Krissie, Travaglini, Kyle J., Tropini, Carolina, Waldburger, Lucas, van Weele, Linda J., Wosczyna, Michael N., Xiang, Jinyi, Xue, Soso, Youngyunpipatkul, Justin, Zardeneta, Macy E., Zhang, Fan, Zhou, Lu, oungyunpipatkul, Justin Y, Castro, Paola, Croote, Derek
Published in Nature (London) (18.10.2018)
Published in Nature (London) (18.10.2018)
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An integrated cell atlas of the lung in health and disease
Sikkema, Lisa, Ramírez-Suástegui, Ciro, Strobl, Daniel C., Gillett, Tessa E., Zappia, Luke, Madissoon, Elo, Markov, Nikolay S., Zaragosi, Laure-Emmanuelle, Ji, Yuge, Ansari, Meshal, Arguel, Marie-Jeanne, Apperloo, Leonie, Banchero, Martin, Bécavin, Christophe, Berg, Marijn, Chichelnitskiy, Evgeny, Chung, Mei-i, Collin, Antoine, Gay, Aurore C. A., Gote-Schniering, Janine, Hooshiar Kashani, Baharak, Inecik, Kemal, Jain, Manu, Kapellos, Theodore S., Kole, Tessa M., Leroy, Sylvie, Mayr, Christoph H., Oliver, Amanda J., von Papen, Michael, Peter, Lance, Taylor, Chase J., Walzthoeni, Thomas, Xu, Chuan, Bui, Linh T., De Donno, Carlo, Dony, Leander, Faiz, Alen, Guo, Minzhe, Gutierrez, Austin J., Heumos, Lukas, Huang, Ni, Ibarra, Ignacio L., Jackson, Nathan D., Kadur Lakshminarasimha Murthy, Preetish, Lotfollahi, Mohammad, Tabib, Tracy, Talavera-López, Carlos, Travaglini, Kyle J., Wilbrey-Clark, Anna, Worlock, Kaylee B., Yoshida, Masahiro, van den Berge, Maarten, Bossé, Yohan, Desai, Tushar J., Eickelberg, Oliver, Kaminski, Naftali, Krasnow, Mark A., Lafyatis, Robert, Nikolic, Marko Z., Powell, Joseph E., Rajagopal, Jayaraj, Rojas, Mauricio, Rozenblatt-Rosen, Orit, Seibold, Max A., Sheppard, Dean, Shepherd, Douglas P., Sin, Don D., Timens, Wim, Tsankov, Alexander M., Whitsett, Jeffrey, Xu, Yan, Banovich, Nicholas E., Barbry, Pascal, Duong, Thu Elizabeth, Falk, Christine S., Meyer, Kerstin B., Kropski, Jonathan A., Pe’er, Dana, Schiller, Herbert B., Tata, Purushothama Rao, Schultze, Joachim L., Teichmann, Sara A., Misharin, Alexander V., Nawijn, Martijn C., Luecken, Malte D., Theis, Fabian J.
Published in Nature medicine (01.06.2023)
Published in Nature medicine (01.06.2023)
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Single-cell genomics and regulatory networks for 388 human brains
Emani, Prashant S, Liu, Jason J, Clarke, Declan, Jensen, Matthew, Warrell, Jonathan, Gupta, Chirag, Meng, Ran, Lee, Che Yu, Xu, Siwei, Dursun, Cagatay, Lou, Shaoke, Chen, Yuhang, Chu, Zhiyuan, Galeev, Timur, Hwang, Ahyeon, Li, Yunyang, Ni, Pengyu, Zhou, Xiao, Bakken, Trygve E, Bendl, Jaroslav, Bicks, Lucy, Chatterjee, Tanima, Cheng, Lijun, Cheng, Yuyan, Dai, Yi, Duan, Ziheng, Flaherty, Mary, Fullard, John F, Gancz, Michael, Garrido-Martín, Diego, Gaynor-Gillett, Sophia, Grundman, Jennifer, Hawken, Natalie, Henry, Ella, Hoffman, Gabriel E, Huang, Ao, Jiang, Yunzhe, Jin, Ting, Jorstad, Nikolas L, Kawaguchi, Riki, Khullar, Saniya, Liu, Jianyin, Liu, Junhao, Liu, Shuang, Ma, Shaojie, Margolis, Michael, Mazariegos, Samantha, Moore, Jill, Moran, Jennifer R, Nguyen, Eric, Phalke, Nishigandha, Pjanic, Milos, Pratt, Henry, Quintero, Diana, Rajagopalan, Ananya S, Riesenmy, Tiernon R, Shedd, Nicole, Shi, Manman, Spector, Megan, Terwilliger, Rosemarie, Travaglini, Kyle J, Wamsley, Brie, Wang, Gaoyuan, Xia, Yan, Xiao, Shaohua, Yang, Andrew C, Zheng, Suchen, Gandal, Michael J, Lee, Donghoon, Lein, Ed S, Roussos, Panos, Sestan, Nenad, Weng, Zhiping, White, Kevin P, Won, Hyejung, Girgenti, Matthew J, Zhang, Jing, Wang, Daifeng, Geschwind, Daniel, Gerstein, Mark
Published in bioRxiv (30.03.2024)
Published in bioRxiv (30.03.2024)
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Cell types of origin of the cell-free transcriptome
Vorperian, Sevahn K., Moufarrej, Mira N., Quake, Stephen R.
Published in Nature biotechnology (01.06.2022)
Published in Nature biotechnology (01.06.2022)
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Comparative transcriptomics reveals human-specific cortical features
Jorstad, Nikolas L, Song, Janet H T, Exposito-Alonso, David, Suresh, Hamsini, Castro-Pacheco, Nathan, Krienen, Fenna M, Yanny, Anna Marie, Close, Jennie, Gelfand, Emily, Long, Brian, Seeman, Stephanie C, Travaglini, Kyle J, Basu, Soumyadeep, Beaudin, Marc, Bertagnolli, Darren, Crow, Megan, Ding, Song-Lin, Eggermont, Jeroen, Glandon, Alexandra, Goldy, Jeff, Kiick, Katelyn, Kroes, Thomas, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Siletti, Kimberly, Somasundaram, Saroja, Tieu, Michael, Torkelson, Amy, Feng, Guoping, Hopkins, William D, Höllt, Thomas, Keene, C Dirk, Linnarsson, Sten, McCarroll, Steven A, Lelieveldt, Boudewijn P, Sherwood, Chet C, Smith, Kimberly, Walsh, Christopher A, Dobin, Alexander, Gillis, Jesse, Lein, Ed S, Hodge, Rebecca D, Bakken, Trygve E
Published in Science (American Association for the Advancement of Science) (13.10.2023)
Published in Science (American Association for the Advancement of Science) (13.10.2023)
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Integrated multimodal cell atlas of Alzheimer's disease
Gabitto, Mariano I, Travaglini, Kyle J, Rachleff, Victoria M, Kaplan, Eitan S, Long, Brian, Ariza, Jeanelle, Ding, Yi, Mahoney, Joseph T, Dee, Nick, Goldy, Jeff, Melief, Erica J, Agrawal, Anamika, Kana, Omar, Zhen, Xingjian, Barlow, Samuel T, Brouner, Krissy, Campos, Jazmin, Campos, John, Carr, Ambrose J, Casper, Tamara, Chakrabarty, Rushil, Clark, Michael, Cool, Jonah, Dalley, Rachel, Darvas, Martin, Ding, Song-Lin, Dolbeare, Tim, Egdorf, Tom, Esposito, Luke, Ferrer, Rebecca, Fleckenstein, Lynn E, Gala, Rohan, Gary, Amanda, Gelfand, Emily, Gloe, Jessica, Guilford, Nathan, Guzman, Junitta, Hirschstein, Daniel, Ho, Windy, Hupp, Madison, Jarsky, Tim, Johansen, Nelson, Kalmbach, Brian E, Keene, Lisa M, Khawand, Sarah, Kilgore, Mitchell D, Kirkland, Amanda, Kunst, Michael, Lee, Brian R, Leytze, Mckaila, Mac Donald, Christine L, Malone, Jocelin, Maltzer, Zoe, Martin, Naomi, McCue, Rachel, McMillen, Delissa, Mena, Gonzalo, Meyerdierks, Emma, Meyers, Kelly P, Mollenkopf, Tyler, Montine, Mark, Nolan, Amber L, Nyhus, Julie K, Olsen, Paul A, Pacleb, Maiya, Pagan, Chelsea M, Peña, Nicholas, Pham, Trangthanh, Pom, Christina Alice, Postupna, Nadia, Rimorin, Christine, Ruiz, Augustin, Saldi, Giuseppe A, Schantz, Aimee M, Shapovalova, Nadiya V, Sorensen, Staci A, Staats, Brian, Sullivan, Matt, Sunkin, Susan M, Thompson, Carol, Tieu, Michael, Ting, Jonathan T, Torkelson, Amy, Tran, Tracy, Valera Cuevas, Nasmil J, Walling-Bell, Sarah, Wang, Ming-Qiang, Waters, Jack, Wilson, Angela M, Xiao, Ming, Haynor, David, Gatto, Nicole M, Jayadev, Suman, Mufti, Shoaib, Ng, Lydia, Mukherjee, Shubhabrata, Crane, Paul K, Latimer, Caitlin S, Levi, Boaz P, Smith, Kimberly A
Published in Nature neuroscience (14.10.2024)
Published in Nature neuroscience (14.10.2024)
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Journal Article
Single-cell genomics and regulatory networks for 388 human brains
Emani, Prashant S, Liu, Jason J, Clarke, Declan, Jensen, Matthew, Warrell, Jonathan, Gupta, Chirag, Meng, Ran, Lee, Che Yu, Xu, Siwei, Dursun, Cagatay, Lou, Shaoke, Chen, Yuhang, Chu, Zhiyuan, Galeev, Timur, Hwang, Ahyeon, Li, Yunyang, Ni, Pengyu, Zhou, Xiao, Bakken, Trygve E, Bendl, Jaroslav, Bicks, Lucy, Chatterjee, Tanima, Cheng, Lijun, Cheng, Yuyan, Dai, Yi, Duan, Ziheng, Flaherty, Mary, Fullard, John F, Gancz, Michael, Garrido-Martín, Diego, Gaynor-Gillett, Sophia, Grundman, Jennifer, Hawken, Natalie, Henry, Ella, Hoffman, Gabriel E, Huang, Ao, Jiang, Yunzhe, Jin, Ting, Jorstad, Nikolas L, Kawaguchi, Riki, Khullar, Saniya, Liu, Jianyin, Liu, Junhao, Liu, Shuang, Ma, Shaojie, Margolis, Michael, Mazariegos, Samantha, Moore, Jill, Moran, Jennifer R, Nguyen, Eric, Phalke, Nishigandha, Pjanic, Milos, Pratt, Henry, Quintero, Diana, Rajagopalan, Ananya S, Riesenmy, Tiernon R, Shedd, Nicole, Shi, Manman, Spector, Megan, Terwilliger, Rosemarie, Travaglini, Kyle J, Wamsley, Brie, Wang, Gaoyuan, Xia, Yan, Xiao, Shaohua, Yang, Andrew C, Zheng, Suchen, Gandal, Michael J, Lee, Donghoon, Lein, Ed S, Roussos, Panos, Sestan, Nenad, Weng, Zhiping, White, Kevin P, Won, Hyejung, Girgenti, Matthew J, Zhang, Jing, Wang, Daifeng, Geschwind, Daniel, Gerstein, Mark
Published in Science (American Association for the Advancement of Science) (24.05.2024)
Published in Science (American Association for the Advancement of Science) (24.05.2024)
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