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Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease
Piwecka, Monika, Rajewsky, Nikolaus, Rybak-Wolf, Agnieszka
Published in Nature reviews. Neurology (01.06.2023)
Published in Nature reviews. Neurology (01.06.2023)
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Asthma–COPD Overlap. Clinical Relevance of Genomic Signatures of Type 2 Inflammation in Chronic Obstructive Pulmonary Disease
Christenson, Stephanie A., Steiling, Katrina, van den Berge, Maarten, Hijazi, Kahkeshan, Hiemstra, Pieter S., Postma, Dirkje S., Lenburg, Marc E., Spira, Avrum, Woodruff, Prescott G.
Published in American journal of respiratory and critical care medicine (01.04.2015)
Published in American journal of respiratory and critical care medicine (01.04.2015)
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Relating the metatranscriptome and metagenome of the human gut
Franzosa, Eric A., Morgan, Xochitl C., Segata, Nicola, Waldron, Levi, Reyes, Joshua, Earl, Ashlee M., Giannoukos, Georgia, Boylan, Matthew R., Ciulla, Dawn, Gevers, Dirk, Izard, Jacques, Garrett, Wendy S., Chan, Andrew T., Huttenhower, Curtis
Published in Proceedings of the National Academy of Sciences - PNAS (03.06.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (03.06.2014)
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Joint profiling of histone modifications and transcriptome in single cells from mouse brain
Zhu, Chenxu, Zhang, Yanxiao, Li, Yang Eric, Lucero, Jacinta, Behrens, M. Margarita, Ren, Bing
Published in Nature methods (01.03.2021)
Published in Nature methods (01.03.2021)
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Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects
van Eijk, Kristel R, de Jong, Simone, Boks, Marco PM, Langeveld, Terry, Colas, Fabrice, Veldink, Jan H, de Kovel, Carolien GF, Janson, Esther, Strengman, Eric, Langfelder, Peter, Kahn, René S, van den Berg, Leonard H, Horvath, Steve, Ophoff, Roel A
Published in BMC genomics (17.11.2012)
Published in BMC genomics (17.11.2012)
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Social stress up-regulates inflammatory gene expression in the leukocyte transcriptome via β-adrenergic induction of myelopoiesis
Powell, Nicole D., Sloan, Erica K., Bailey, Michael T., Arevalo, Jesusa M. G., Miller, Gregory E., Chen, Edith, Kobor, Michael S., Reader, Brenda F., Sheridan, John F., Cole, Steven W.
Published in Proceedings of the National Academy of Sciences - PNAS (08.10.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (08.10.2013)
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Integrative transcriptome analyses of the aging brain implicate altered splicing in Alzheimer’s disease susceptibility
Raj, Towfique, Li, Yang I., Wong, Garrett, Humphrey, Jack, Wang, Minghui, Ramdhani, Satesh, Wang, Ying-Chih, Ng, Bernard, Gupta, Ishaan, Haroutunian, Vahram, Schadt, Eric E., Young-Pearse, Tracy, Mostafavi, Sara, Zhang, Bin, Sklar, Pamela, Bennett, David A., De Jager, Philip L.
Published in Nature genetics (01.11.2018)
Published in Nature genetics (01.11.2018)
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Diagnostic utility of transcriptome sequencing for rare Mendelian diseases
Lee, Hane, Huang, Alden Y., Wang, Lee-kai, Yoon, Amanda J., Renteria, Genecee, Eskin, Ascia, Signer, Rebecca H., Dorrani, Naghmeh, Nieves-Rodriguez, Shirley, Wan, Jijun, Douine, Emilie D., Woods, Jeremy D., Dell’Angelica, Esteban C., Fogel, Brent L., Martin, Martin G., Butte, Manish J., Parker, Neil H., Wang, Richard T., Shieh, Perry B., Wong, Derek A., Gallant, Natalie, Singh, Kathryn E., Tavyev Asher, Y. Jane, Sinsheimer, Janet S., Krakow, Deborah, Loo, Sandra K., Allard, Patrick, Papp, Jeanette C., Palmer, Christina, Martinez-Agosto, Julian A., Nelson, Stanley F.
Published in Genetics in medicine (01.03.2020)
Published in Genetics in medicine (01.03.2020)
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Sex Differences in Nucleus Accumbens Transcriptome Profiles Associated with Susceptibility versus Resilience to Subchronic Variable Stress
Hodes, Georgia E., Pfau, Madeline L., Purushothaman, Immanuel, Ahn, H. Francisca, Golden, Sam A., Christoffel, Daniel J., Magida, Jane, Brancato, Anna, Takahashi, Aki, Flanigan, Meghan E., Ménard, Caroline, Aleyasin, Hossein, Koo, Ja Wook, Lorsch, Zachary S., Feng, Jian, Heshmati, Mitra, Wang, Minghui, Turecki, Gustavo, Neve, Rachel, Zhang, Bin, Shen, Li, Nestler, Eric J., Russo, Scott J.
Published in The Journal of neuroscience (16.12.2015)
Published in The Journal of neuroscience (16.12.2015)
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Epigenetic programming underpins B cell dysfunction in human SLE
Scharer, Christopher D., Blalock, Emily L., Mi, Tian, Barwick, Benjamin G., Jenks, Scott A., Deguchi, Tsuneo, Cashman, Kevin S., Neary, Bridget E., Patterson, Dillon G., Hicks, Sakeenah L., Khosroshahi, Arezou, Eun-Hyung Lee, F., Wei, Chungwen, Sanz, Iñaki, Boss, Jeremy M.
Published in Nature immunology (01.08.2019)
Published in Nature immunology (01.08.2019)
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Shared and Distinct Aspects of the Sepsis Transcriptomic Response to Fecal Peritonitis and Pneumonia
Burnham, Katie L., Davenport, Emma E., Radhakrishnan, Jayachandran, Humburg, Peter, Gordon, Anthony C., Hutton, Paula, Svoren-Jabalera, Eduardo, Garrard, Christopher, Hill, Adrian V. S., Hinds, Charles J., Knight, Julian C.
Published in American journal of respiratory and critical care medicine (01.08.2017)
Published in American journal of respiratory and critical care medicine (01.08.2017)
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Skeletal Muscle Transcriptomic Comparison between Long-Term Trained and Untrained Men and Women
Chapman, Mark A., Arif, Muhammad, Emanuelsson, Eric B., Reitzner, Stefan M., Lindholm, Maléne E., Mardinoglu, Adil, Sundberg, Carl Johan
Published in Cell reports (Cambridge) (23.06.2020)
Published in Cell reports (Cambridge) (23.06.2020)
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Dysregulated transcriptional responses to SARS-CoV-2 in the periphery
McClain, Micah T., Constantine, Florica J., Henao, Ricardo, Liu, Yiling, Tsalik, Ephraim L., Burke, Thomas W., Steinbrink, Julie M., Petzold, Elizabeth, Nicholson, Bradly P., Rolfe, Robert, Kraft, Bryan D., Kelly, Matthew S., Saban, Daniel R., Yu, Chen, Shen, Xiling, Ko, Emily M., Sempowski, Gregory D., Denny, Thomas N., Ginsburg, Geoffrey S., Woods, Christopher W.
Published in Nature communications (17.02.2021)
Published in Nature communications (17.02.2021)
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Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome
Porcu, Eleonora, Sadler, Marie C., Lepik, Kaido, Auwerx, Chiara, Wood, Andrew R., Weihs, Antoine, Sleiman, Maroun S. Bou, Ribeiro, Diogo M., Bandinelli, Stefania, Tanaka, Toshiko, Nauck, Matthias, Völker, Uwe, Delaneau, Olivier, Metspalu, Andres, Teumer, Alexander, Frayling, Timothy, Santoni, Federico A., Reymond, Alexandre, Kutalik, Zoltán
Published in Nature communications (24.09.2021)
Published in Nature communications (24.09.2021)
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ω-3PUFA supplementation ameliorates adipose tissue inflammation and insulin-stimulated glucose disposal in subjects with obesity: a potential role for apolipoprotein E
Hernandez, James D., Li, Ting, Rau, Cassandra M., LeSuer, William E., Wang, Panwen, Coletta, Dawn K., Madura, James A., Jacobsen, Elizabeth A., De Filippis, Eleanna
Published in International Journal of Obesity (01.06.2021)
Published in International Journal of Obesity (01.06.2021)
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Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS
Prudencio, Mercedes, Belzil, Veronique V, Batra, Ranjan, Ross, Christian A, Gendron, Tania F, Pregent, Luc J, Murray, Melissa E, Overstreet, Karen K, Piazza-Johnston, Amelia E, Desaro, Pamela, Bieniek, Kevin F, DeTure, Michael, Lee, Wing C, Biendarra, Sherri M, Davis, Mary D, Baker, Matthew C, Perkerson, Ralph B, van Blitterswijk, Marka, Stetler, Caroline T, Rademakers, Rosa, Link, Christopher D, Dickson, Dennis W, Boylan, Kevin B, Li, Hu, Petrucelli, Leonard
Published in Nature neuroscience (01.08.2015)
Published in Nature neuroscience (01.08.2015)
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