Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil
Peterson, Matthew J, Handakumbura, Pubudu P, Thompson, Allison M, Russell, Zachary R, Kim, Young-Mo, Fansler, Sarah J, Smith, Montana L, Toyoda, Jason G, Chu, Rosey K, Stanfill, Bryan A, Fransen, Steven C, Bailey, Vanessa L, Jansson, Christer, Hixson, Kim K, Callister, Stephen J
Published in PloS one (08.12.2021)
Published in PloS one (08.12.2021)
Get full text
Journal Article
Using Macro- and Microscale Preservation in Vertebrate Fossils as Predictors for Molecular Preservation in Fluvial Environments
Colleary, Caitlin, O’Reilly, Shane, Dolocan, Andrei, Toyoda, Jason G., Chu, Rosalie K., Tfaily, Malak M., Hochella, Michael F., Nesbitt, Sterling J.
Published in Biology (Basel, Switzerland) (02.09.2022)
Published in Biology (Basel, Switzerland) (02.09.2022)
Get full text
Journal Article
Ecological theory applied to environmental metabolomes reveals compositional divergence despite conserved molecular properties
Danczak, Robert E., Goldman, Amy E., Chu, Rosalie K., Toyoda, Jason G., Garayburu-Caruso, Vanessa A., Tolić, Nikola, Graham, Emily B., Morad, Joseph W., Renteria, Lupita, Wells, Jacqueline R., Herzog, Skuyler P., Ward, Adam S., Stegen, James C.
Published in The Science of the total environment (20.09.2021)
Published in The Science of the total environment (20.09.2021)
Get full text
Journal Article
Microbial sensitivity to temperature and sulfate deposition modulates greenhouse gas emissions from peat soils
AminiTabrizi, Roya, Graf‐Grachet, Nathalia, Chu, Rosalie K., Toyoda, Jason G., Hoyt, David W., Hamdan, Rasha, Wilson, Rachel M., Tfaily, Malak M.
Published in Global change biology (01.04.2023)
Published in Global change biology (01.04.2023)
Get full text
Journal Article
Rethinking Aerobic Respiration in the Hyporheic Zone under Variation in Carbon and Nitrogen Stoichiometry
Tureţcaia, Anna B., Garayburu-Caruso, Vanessa A., Kaufman, Matthew H., Danczak, Robert E., Stegen, James C., Chu, Rosalie K., Toyoda, Jason G., Cardenas, M. Bayani, Graham, Emily B.
Published in Environmental science & technology (17.10.2023)
Published in Environmental science & technology (17.10.2023)
Get full text
Journal Article
Experimental Open Air Burning of Vegetation Enhances Organic Matter Chemical Heterogeneity Compared to Laboratory Burns
Myers-Pigg, Allison N., Grieger, Samantha, Roebuck, J. Alan, Barnes, Morgan E., Bladon, Kevin D., Bailey, John D., Barton, Riley, Chu, Rosalie K., Graham, Emily B., Homolka, Khadijah K., Kew, William, Lipton, Andrew S., Scheibe, Timothy, Toyoda, Jason G., Wagner, Sasha
Published in Environmental science & technology (22.05.2024)
Published in Environmental science & technology (22.05.2024)
Get full text
Journal Article
Rethinking Aerobic Respiration in the Hyporheic Zone under Variation in Carbon and Nitrogen Stoichiometry
Tureţcaia, Anna B., Garayburu-Caruso, Vanessa A., Kaufman, Matthew H., Danczak, Robert E., Stegen, James C., Chu, Rosalie K., Toyoda, Jason G., Cardenas, M. Bayani, Graham, Emily B.
Published in Environmental science & technology (05.10.2023)
Get full text
Published in Environmental science & technology (05.10.2023)
Journal Article
Experimental Open Air Burning of Vegetation Enhances Organic Matter Chemical Heterogeneity Compared to Laboratory Burns
Myers-Pigg, Allison N., Grieger, Samantha, Roebuck, J. Alan, Barnes, Morgan E., Bladon, Kevin D., Bailey, John D., Barton, Riley, Chu, Rosalie K., Graham, Emily B., Homolka, Khadijah K., Kew, William, Lipton, Andrew S., Scheibe, Timothy, Toyoda, Jason G., Wagner, Sasha
Published in Environmental science & technology (22.05.2024)
Get full text
Published in Environmental science & technology (22.05.2024)
Journal Article
Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
Hildebrand, Gina A., Honeker, Linnea K., Freire-Zapata, Viviana, Ayala-Ortiz, Christian O., Rajakaruna, Sumudu, Fudyma, Jane D., Daber, L. Erik, AminiTabrizi, Roya, Chu, Rosalie K., Toyoda, Jason G., Flowers, Sarah E., Hoyt, David W., Hamdan, Rasha, Gil-Loaiza, Juliana, Shi, Lingling, Dippold, Michaela A., Ladd, S. Nemiah, Werner, Christiane, Meredith, Laura K., Tfaily, Malak M.
Published in The Science of the total environment (20.07.2023)
Get full text
Published in The Science of the total environment (20.07.2023)
Journal Article
Spatial gradients in the characteristics of soil-carbon fractions are associated with abiotic features but not microbial communities
Sengupta, Aditi, Indivero, Julia, Gunn, Cailene, Tfaily, Malak M, Chu, Rosalie K, Toyoda, Jason, Bailey, Vanessa L, Ward, Nicholas D, Stegen, James C
Published in Biogeosciences (10.10.2019)
Published in Biogeosciences (10.10.2019)
Get full text
Journal Article
Carbon Limitation Leads to Thermodynamic Regulation of Aerobic Metabolism
Garayburu-Caruso, Vanessa A, Stegen, James C, Song, Hyun-Seob, Renteria, Lupita, Wells, Jaqueline, Garcia, Whitney, Resch, Charles T, Goldman, Amy E, Chu, Rosalie K, Toyoda, Jason, Graham, Emily B
Published in Environmental science & technology letters (14.07.2020)
Published in Environmental science & technology letters (14.07.2020)
Get full text
Journal Article
Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest
Honeker, Linnea K, Pugliese, Giovanni, Ingrisch, Johannes, Fudyma, Jane, Gil-Loaiza, Juliana, Carpenter, Elizabeth, Singer, Esther, Hildebrand, Gina, Shi, Lingling, Hoyt, David W, Chu, Rosalie K, Toyoda, Jason, Krechmer, Jordan E, Claflin, Megan S, Ayala-Ortiz, Christian, Freire-Zapata, Viviana, Pfannerstill, Eva Y, Daber, L Erik, Meeran, Kathiravan, Dippold, Michaela A, Kreuzwieser, Jürgen, Williams, Jonathan, Ladd, S Nemiah, Werner, Christiane, Tfaily, Malak M, Meredith, Laura K
Published in Nature microbiology (01.08.2023)
Published in Nature microbiology (01.08.2023)
Get full text
Journal Article
Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil
Matthew J. Peterson, Pubudu P. Handakumbura, Allison M. Thompson, Zachary R. Russell, Young-Mo Kim, Sarah J. Fansler, Montana L. Smith, Jason G. Toyoda, Rosey K. Chu, Bryan A. Stanfill, Steven C. Fransen, Vanessa L. Bailey, Christer Jansson, Kim K. Hixson, Stephen J. Callister
Published in PloS one (01.01.2021)
Get full text
Published in PloS one (01.01.2021)
Journal Article
Co-located contemporaneous mapping of morphological, hydrological, chemical, and biological conditions in a 5th-order mountain stream network, Oregon, USA
Ward, Adam S., Zarnetske, Jay P., Baranov, Viktor, Blaen, Phillip, Brekenfeld, Nicolai, Chu, Rosalie K., Derelle, Romain, Drummond, Jennifer, Fleckenstein, Jan, Garayburu-Caruso, Vanessa A., Graham, Emily B., Hannah, David, Harman, Ciaran, Herzog, Skuyler, Hixson, Jase, Knapp, Julia, Krause, Stefan, Kurz, Marie J., Lewandowski, Jorg, Li, Angang, Marti Roca, Eugenia, Miller, Melinda, Milner, Alexander, Neil, Kerry, Orsini, Luisa, Packman, Aaron I., Plont, Stephen, Renteria, Lupita, Roche, Kevin, Royer, Todd, Schmadel, Noah M., Segura, Catalina, Stegen, James C., Toyoda, Jason G., Wells, Jacqueline R., Wisnoski, Nathan I., Wondzell, Steven M.
Published in Earth system science data (22.10.2019)
Published in Earth system science data (22.10.2019)
Get full text
Journal Article
Meta-metabolome ecology reveals that geochemistry and microbial functional potential are linked to organic matter development across seven rivers
Danczak, Robert E, Goldman, Amy E, Borton, Mikayla A, Chu, Rosalie K, Toyoda, Jason G, Garayburu-Caruso, Vanessa A, Graham, Emily B, Morad, Joseph W, Renteria, Lupita, Hager, Jacqueline R, Arnon, Shai, Brooks, Scott, Bar-Zeev, Edo, Jones, Michael, Jones, Nikki, Lewandowski, Jorg, Meile, Christof, Muller, Birgit M, Schalles, John, Schulz, Hanna, Ward, Adam, Stegen, James C
Published in bioRxiv (11.01.2024)
Published in bioRxiv (11.01.2024)
Get full text
Paper
One thousand soils for molecular understanding of belowground carbon cycling
Bowman, Maggie, Heath, Alexis E, Varga, Tamas, Battu, Anil, Chu, Rosalie K, Toyoda, Jason G, Cheeke, Tanya, Porter, Stephanie, Moffett, Kevan, Letendre, Brittany, Qafoku, Odeta, Bargar, John, Mans, Douglas, Hess, Nancy, Graham, Emily B
Published in bioRxiv (15.12.2022)
Published in bioRxiv (15.12.2022)
Get full text
Paper
Ecological theory applied to environmental metabolomes reveals compositional divergence despite conserved molecular properties
Danczak, Robert E, Goldman, Amy E, Chu, Rosalie K, Toyoda, Jason G, Garayburu-Caruso, Vanessa A, Tolic, Nikola, Graham, Emily B, Morad, Joseph, Renteria, Lupita, Wells, Jacqueline R, Herzog, Skuyler P, Ward, Adam S, Stegen, James C
Published in bioRxiv (13.02.2020)
Published in bioRxiv (13.02.2020)
Get full text
Paper