Protein lactylation induced by neural excitation
Hagihara, Hideo, Shoji, Hirotaka, Otabi, Hikari, Toyoda, Atsushi, Katoh, Kaoru, Namihira, Masakazu, Miyakawa, Tsuyoshi
Published in Cell reports (Cambridge) (12.10.2021)
Published in Cell reports (Cambridge) (12.10.2021)
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Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
Kajitani, Rei, Toshimoto, Kouta, Noguchi, Hideki, Toyoda, Atsushi, Ogura, Yoshitoshi, Okuno, Miki, Yabana, Mitsuru, Harada, Masayuki, Nagayasu, Eiji, Maruyama, Haruhiko, Kohara, Yuji, Fujiyama, Asao, Hayashi, Tetsuya, Itoh, Takehiko
Published in Genome research (01.08.2014)
Published in Genome research (01.08.2014)
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Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions
Kajitani, Rei, Yoshimura, Dai, Okuno, Miki, Minakuchi, Yohei, Kagoshima, Hiroshi, Fujiyama, Asao, Kubokawa, Kaoru, Kohara, Yuji, Toyoda, Atsushi, Itoh, Takehiko
Published in Nature communications (12.04.2019)
Published in Nature communications (12.04.2019)
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Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis
Rai, Amit, Hirakawa, Hideki, Nakabayashi, Ryo, Kikuchi, Shinji, Hayashi, Koki, Rai, Megha, Tsugawa, Hiroshi, Nakaya, Taiki, Mori, Tetsuya, Nagasaki, Hideki, Fukushi, Runa, Kusuya, Yoko, Takahashi, Hiroki, Uchiyama, Hiroshi, Toyoda, Atsushi, Hikosaka, Shoko, Goto, Eiji, Saito, Kazuki, Yamazaki, Mami
Published in Nature communications (15.01.2021)
Published in Nature communications (15.01.2021)
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Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer
Yachida, Shinichi, Mizutani, Sayaka, Shiroma, Hirotsugu, Shiba, Satoshi, Nakajima, Takeshi, Sakamoto, Taku, Watanabe, Hikaru, Masuda, Keigo, Nishimoto, Yuichiro, Kubo, Masaru, Hosoda, Fumie, Rokutan, Hirofumi, Matsumoto, Minori, Takamaru, Hiroyuki, Yamada, Masayoshi, Matsuda, Takahisa, Iwasaki, Motoki, Yamaji, Taiki, Yachida, Tatsuo, Soga, Tomoyoshi, Kurokawa, Ken, Toyoda, Atsushi, Ogura, Yoshitoshi, Hayashi, Tetsuya, Hatakeyama, Masanori, Nakagama, Hitoshi, Saito, Yutaka, Fukuda, Shinji, Shibata, Tatsuhiro, Yamada, Takuji
Published in Nature medicine (01.06.2019)
Published in Nature medicine (01.06.2019)
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A key metabolic gene for recurrent freshwater colonization and radiation in fishes
Ishikawa, Asano, Kabeya, Naoki, Ikeya, Koki, Kakioka, Ryo, Cech, Jennifer N, Osada, Naoki, Leal, Miguel C, Inoue, Jun, Kume, Manabu, Toyoda, Atsushi, Tezuka, Ayumi, Nagano, Atsushi J, Yamasaki, Yo Y, Suzuki, Yuto, Kokita, Tomoyuki, Takahashi, Hiroshi, Lucek, Kay, Marques, David, Takehana, Yusuke, Naruse, Kiyoshi, Mori, Seiichi, Monroig, Oscar, Ladd, Nemiah, Schubert, Carsten J, Matthews, Blake, Peichel, Catherine L, Seehausen, Ole, Yoshizaki, Goro, Kitano, Jun
Published in Science (American Association for the Advancement of Science) (31.05.2019)
Published in Science (American Association for the Advancement of Science) (31.05.2019)
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Heat-killed Lactobacillus helveticus strain MCC1848 confers resilience to anxiety or depression-like symptoms caused by subchronic social defeat stress in mice
Maehata, Hazuki, Kobayashi, Yodai, Mitsuyama, Eri, Kawase, Takahiro, Kuhara, Tetsuya, Xiao, Jin-Zhong, Tsukahara, Takamitsu, Toyoda, Atsushi
Published in Bioscience, biotechnology, and biochemistry (03.07.2019)
Published in Bioscience, biotechnology, and biochemistry (03.07.2019)
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The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression
Ravinet, Mark, Yoshida, Kohta, Shigenobu, Shuji, Toyoda, Atsushi, Fujiyama, Asao, Kitano, Jun
Published in PLoS genetics (23.05.2018)
Published in PLoS genetics (23.05.2018)
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High-quality genome assembly of the silkworm, Bombyx mori
Kawamoto, Munetaka, Jouraku, Akiya, Toyoda, Atsushi, Yokoi, Kakeru, Minakuchi, Yohei, Katsuma, Susumu, Fujiyama, Asao, Kiuchi, Takashi, Yamamoto, Kimiko, Shimada, Toru
Published in Insect biochemistry and molecular biology (01.04.2019)
Published in Insect biochemistry and molecular biology (01.04.2019)
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Genome evolution in the allotetraploid frog Xenopus laevis
Session, Adam M, Uno, Yoshinobu, Kwon, Taejoon, Chapman, Jarrod A, Toyoda, Atsushi, Takahashi, Shuji, Fukui, Akimasa, Hikosaka, Akira, Suzuki, Atsushi, Kondo, Mariko, van Heeringen, Simon J, Quigley, Ian, Heinz, Sven, Ogino, Hajime, Ochi, Haruki, Hellsten, Uffe, Lyons, Jessica B, Simakov, Oleg, Putnam, Nicholas, Stites, Jonathan, Kuroki, Yoko, Tanaka, Toshiaki, Michiue, Tatsuo, Watanabe, Minoru, Bogdanovic, Ozren, Lister, Ryan, Georgiou, Georgios, Paranjpe, Sarita S, van Kruijsbergen, Ila, Shu, Shengquiang, Carlson, Joseph, Kinoshita, Tsutomu, Ohta, Yuko, Mawaribuchi, Shuuji, Jenkins, Jerry, Grimwood, Jane, Schmutz, Jeremy, Mitros, Therese, Mozaffari, Sahar V, Suzuki, Yutaka, Haramoto, Yoshikazu, Yamamoto, Takamasa S, Takagi, Chiyo, Heald, Rebecca, Miller, Kelly, Haudenschild, Christian, Kitzman, Jacob, Nakayama, Takuya, Izutsu, Yumi, Robert, Jacques, Fortriede, Joshua, Burns, Kevin, Lotay, Vaneet, Karimi, Kamran, Yasuoka, Yuuri, Dichmann, Darwin S, Flajnik, Martin F, Houston, Douglas W, Shendure, Jay, DuPasquier, Louis, Vize, Peter D, Zorn, Aaron M, Ito, Michihiko, Marcotte, Edward M, Wallingford, John B, Ito, Yuzuru, Asashima, Makoto, Ueno, Naoto, Matsuda, Yoichi, Veenstra, Gert Jan C, Fujiyama, Asao, Harland, Richard M, Taira, Masanori, Rokhsar, Daniel S
Published in Nature (London) (20.10.2016)
Published in Nature (London) (20.10.2016)
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The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization
Nishiyama, Tomoaki, Sakayama, Hidetoshi, de Vries, Jan, Buschmann, Henrik, Saint-Marcoux, Denis, Ullrich, Kristian K., Haas, Fabian B., Vanderstraeten, Lisa, Becker, Dirk, Lang, Daniel, Vosolsobě, Stanislav, Rombauts, Stephane, Wilhelmsson, Per K.I., Janitza, Philipp, Kern, Ramona, Heyl, Alexander, Rümpler, Florian, Villalobos, Luz Irina A. Calderón, Clay, John M., Skokan, Roman, Toyoda, Atsushi, Suzuki, Yutaka, Kagoshima, Hiroshi, Schijlen, Elio, Tajeshwar, Navindra, Catarino, Bruno, Hetherington, Alexander J., Saltykova, Assia, Bonnot, Clemence, Breuninger, Holger, Symeonidi, Aikaterini, Radhakrishnan, Guru V., Van Nieuwerburgh, Filip, Deforce, Dieter, Chang, Caren, Karol, Kenneth G., Hedrich, Rainer, Ulvskov, Peter, Glöckner, Gernot, Delwiche, Charles F., Petrášek, Jan, Van de Peer, Yves, Friml, Jiri, Beilby, Mary, Dolan, Liam, Kohara, Yuji, Sugano, Sumio, Fujiyama, Asao, Delaux, Pierre-Marc, Quint, Marcel, Theißen, Günter, Hagemann, Martin, Harholt, Jesper, Dunand, Christophe, Zachgo, Sabine, Langdale, Jane, Maumus, Florian, Van Der Straeten, Dominique, Gould, Sven B., Rensing, Stefan A.
Published in Cell (12.07.2018)
Published in Cell (12.07.2018)
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An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil
Hayatsu, Masahito, Tago, Kanako, Uchiyama, Ikuo, Toyoda, Atsushi, Wang, Yong, Shimomura, Yumi, Okubo, Takashi, Kurisu, Futoshi, Hirono, Yuhei, Nonaka, Kunihiko, Akiyama, Hiroko, Itoh, Takehiko, Takami, Hideto
Published in The ISME Journal (01.05.2017)
Published in The ISME Journal (01.05.2017)
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Genome sequence and analysis of the Japanese morning glory Ipomoea nil
Hoshino, Atsushi, Jayakumar, Vasanthan, Nitasaka, Eiji, Toyoda, Atsushi, Noguchi, Hideki, Itoh, Takehiko, Shin-I, Tadasu, Minakuchi, Yohei, Koda, Yuki, Nagano, Atsushi J, Yasugi, Masaki, Honjo, Mie N, Kudoh, Hiroshi, Seki, Motoaki, Kamiya, Asako, Shiraki, Toshiyuki, Carninci, Piero, Asamizu, Erika, Nishide, Hiroyo, Tanaka, Sachiko, Park, Kyeung-Il, Morita, Yasumasa, Yokoyama, Kohei, Uchiyama, Ikuo, Tanaka, Yoshikazu, Tabata, Satoshi, Shinozaki, Kazuo, Hayashizaki, Yoshihide, Kohara, Yuji, Suzuki, Yutaka, Sugano, Sumio, Fujiyama, Asao, Iida, Shigeru, Sakakibara, Yasubumi
Published in Nature communications (08.11.2016)
Published in Nature communications (08.11.2016)
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The RNA helicase DDX6 controls early mouse embryogenesis by repressing aberrant inhibition of BMP signaling through miRNA-mediated gene silencing
Kim, Jessica, Muraoka, Masafumi, Okada, Hajime, Toyoda, Atsushi, Ajima, Rieko, Saga, Yumiko
Published in PLoS genetics (05.10.2022)
Published in PLoS genetics (05.10.2022)
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