Cyclical Curriculum Learning
Kesgin, H. Toprak, Amasyali, M. Fatih
Published in IEEE transaction on neural networks and learning systems (01.09.2024)
Published in IEEE transaction on neural networks and learning systems (01.09.2024)
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Journal Article
Accurate and efficient detection of gene fusions from RNA sequencing data
Uhrig, Sebastian, Ellermann, Julia, Walther, Tatjana, Burkhardt, Pauline, Fröhlich, Martina, Hutter, Barbara, Toprak, Umut H, Neumann, Olaf, Stenzinger, Albrecht, Scholl, Claudia, Fröhling, Stefan, Brors, Benedikt
Published in Genome research (01.03.2021)
Published in Genome research (01.03.2021)
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Journal Article
NRG1 Fusions in KRAS Wild-Type Pancreatic Cancer
Heining, Christoph, Horak, Peter, Uhrig, Sebastian, Codo, Paula L, Klink, Barbara, Hutter, Barbara, Fröhlich, Martina, Bonekamp, David, Richter, Daniela, Steiger, Katja, Penzel, Roland, Endris, Volker, Ehrenberg, Karl Roland, Frank, Stephanie, Kleinheinz, Kortine, Toprak, Umut H, Schlesner, Matthias, Mandal, Ranadip, Schulz, Lothar, Lambertz, Helmut, Fetscher, Sebastian, Bitzer, Michael, Malek, Nisar P, Horger, Marius, Giese, Nathalia A, Strobel, Oliver, Hackert, Thilo, Springfeld, Christoph, Feuerbach, Lars, Bergmann, Frank, Schröck, Evelin, von Kalle, Christof, Weichert, Wilko, Scholl, Claudia, Ball, Claudia R, Stenzinger, Albrecht, Brors, Benedikt, Fröhling, Stefan, Glimm, Hanno
Published in Cancer discovery (01.09.2018)
Published in Cancer discovery (01.09.2018)
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Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer
Ishaque, Naveed, Abba, Mohammed L, Hauser, Christine, Patil, Nitin, Paramasivam, Nagarajan, Huebschmann, Daniel, Leupold, Jörg Hendrik, Balasubramanian, Gnana Prakash, Kleinheinz, Kortine, Toprak, Umut H, Hutter, Barbara, Benner, Axel, Shavinskaya, Anna, Zhou, Chan, Gu, Zuguang, Kerssemakers, Jules, Marx, Alexander, Moniuszko, Marcin, Kozlowski, Miroslaw, Reszec, Joanna, Niklinski, Jacek, Eils, Jürgen, Schlesner, Matthias, Eils, Roland, Brors, Benedikt, Allgayer, Heike
Published in Nature communications (14.11.2018)
Published in Nature communications (14.11.2018)
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Journal Article
Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome
Hartlieb, Sabine A, Sieverling, Lina, Nadler-Holly, Michal, Ziehm, Matthias, Toprak, Umut H, Herrmann, Carl, Ishaque, Naveed, Okonechnikov, Konstantin, Gartlgruber, Moritz, Park, Young-Gyu, Wecht, Elisa Maria, Savelyeva, Larissa, Henrich, Kai-Oliver, Rosswog, Carolina, Fischer, Matthias, Hero, Barbara, Jones, David T W, Pfaff, Elke, Witt, Olaf, Pfister, Stefan M, Volckmann, Richard, Koster, Jan, Kiesel, Katharina, Rippe, Karsten, Taschner-Mandl, Sabine, Ambros, Peter, Brors, Benedikt, Selbach, Matthias, Feuerbach, Lars, Westermann, Frank
Published in Nature communications (24.02.2021)
Published in Nature communications (24.02.2021)
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Journal Article
Mutational patterns and regulatory networks in epigenetic subgroups of meningioma
Paramasivam, Nagarajan, Hübschmann, Daniel, Toprak, Umut H, Ishaque, Naveed, Neidert, Marian, Schrimpf, Daniel, Stichel, Damian, Reuss, David, Sievers, Philipp, Reinhardt, Annekathrin, Wefers, Annika K., Jones, David T. W., Gu, Zuguang, Werner, Johannes, Uhrig, Sebastian, Wirsching, Hans-Georg, Schick, Matthias, Bewerunge-Hudler, Melanie, Beck, Katja, Brehmer, Stephanie, Urbschat, Steffi, Seiz-Rosenhagen, Marcel, Hänggi, Daniel, Herold-Mende, Christel, Ketter, Ralf, Eils, Roland, Ram, Zvi, Pfister, Stefan M., Wick, Wolfgang, Weller, Michael, Grossmann, Rachel, von Deimling, Andreas, Schlesner, Matthias, Sahm, Felix
Published in Acta neuropathologica (01.08.2019)
Published in Acta neuropathologica (01.08.2019)
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Journal Article
MYC/MIZ1-dependent gene repression inversely coordinates the circadian clock with cell cycle and proliferation
Shostak, Anton, Ruppert, Bianca, Ha, Nati, Bruns, Philipp, Toprak, Umut H, Eils, Roland, Schlesner, Matthias, Diernfellner, Axel, Brunner, Michael
Published in Nature communications (24.06.2016)
Published in Nature communications (24.06.2016)
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Journal Article
Globally altered epigenetic landscape and delayed osteogenic differentiation in H3.3-G34W-mutant giant cell tumor of bone
Lutsik, Pavlo, Baude, Annika, Mancarella, Daniela, Öz, Simin, Kühn, Alexander, Toth, Reka, Hey, Joschka, Toprak, Umut H., Lim, Jinyeong, Nguyen, Viet Ha, Jiang, Chao, Mayakonda, Anand, Hartmann, Mark, Rosemann, Felix, Breuer, Kersten, Vonficht, Dominik, Grünschläger, Florian, Lee, Suman, Schuhmacher, Maren Kirstin, Kusevic, Denis, Jauch, Anna, Weichenhan, Dieter, Zustin, Jozef, Schlesner, Matthias, Haas, Simon, Park, Joo Hyun, Park, Yoon Jung, Oppermann, Udo, Jeltsch, Albert, Haller, Florian, Fellenberg, Jörg, Lindroth, Anders M., Plass, Christoph
Published in Nature communications (27.10.2020)
Published in Nature communications (27.10.2020)
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Journal Article
Cryptic insertion of MYC exons 2 and 3 into the immunoglobulin heavy chain locus detected by whole genome sequencing in a case of " MYC -negative" Burkitt lymphoma
Wagener, Rabea, Bens, Susanne, Toprak, Umut H, Seufert, Julian, López, Cristina, Scholz, Ingrid, Herbrueggen, Heidi, Oschlies, Ilske, Stilgenbauer, Stephan, Schlesner, Matthias, Klapper, Wolfram, Burkhardt, Birgit, Siebert, Reiner
Published in Haematologica (Roma) (01.04.2020)
Published in Haematologica (Roma) (01.04.2020)
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Journal Article
New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs
Orr, Brent A., Toprak, Umut H., Hovestadt, Volker, Jones, David T.W., Capper, David, Sill, Martin, Buchhalter, Ivo, Northcott, Paul A., Leis, Irina, Ryzhova, Marina, Koelsche, Christian, Pfaff, Elke, Allen, Sariah J., Balasubramanian, Gnanaprakash, Brabetz, Sebastian, Johann, Pascal D., Sahm, Felix, Mackay, Alan, Remke, Marc, Phillips, Joanna J., Perry, Arie, Cowdrey, Cynthia, Drissi, Rachid, Fouladi, Maryam, Giangaspero, Felice, Grajkowska, Wiesława, Scheurlen, Wolfram, Pietsch, Torsten, Hagel, Christian, Gojo, Johannes, Lötsch, Daniela, Berger, Walter, Slavc, Irene, Haberler, Christine, Jouvet, Anne, Holm, Stefan, Hofer, Silvia, Prinz, Marco, Keohane, Catherine, Fried, Iris, Mawrin, Christian, Scheie, David, Mobley, Bret C., Schniederjan, Matthew J., Santi, Mariarita, Buccoliero, Anna M., Dahiya, Sonika, Kramm, Christof M., von Bueren, André O., von Hoff, Katja, Rutkowski, Stefan, Herold-Mende, Christel, Frühwald, Michael C., Milde, Till, Wesseling, Pieter, Rößler, Jochen, Schüller, Ulrich, Ebinger, Martin, Schittenhelm, Jens, Frank, Stephan, Grobholz, Rainer, Vajtai, Istvan, Hans, Volkmar, Schneppenheim, Reinhard, Zitterbart, Karel, Collins, V. Peter, Aronica, Eleonora, Varlet, Pascale, Puget, Stephanie, Figarella-Branger, Dominique, Wolter, Marietta, Schuhmann, Martin U., Shalaby, Tarek, Grotzer, Michael, van Meter, Timothy, Monoranu, Camelia-Maria, Reifenberger, Guido, Snuderl, Matija, Forrester, Lynn Ann, Koster, Jan, Versteeg, Rogier, Volckmann, Richard, van Sluis, Peter, Wolf, Stephan, Mikkelsen, Tom, Gajjar, Amar, Aldape, Kenneth, Moore, Andrew S., Taylor, Michael D., Jones, Chris, Jabado, Nada, Karajannis, Matthias A., Eils, Roland, Schlesner, Matthias, Lichter, Peter, von Deimling, Andreas, Pfister, Stefan M., Ellison, David W., Korshunov, Andrey, Kool, Marcel
Published in Cell (25.02.2016)
Published in Cell (25.02.2016)
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Focal structural variants revealed by whole genome sequencing disrupt the histone demethylase KDM4C in B-cell lymphomas
Lopez, Cristina, Schleussner, Nikolai, Bernhart, Stephan H, Kleinheinz, Kortine, Sungalee, Stephanie, Sczakiel, Henrike L, Kretzmer, Helene, Toprak, Umut H, Glaser, Selina, Wagener, Rabea, Ammerpohl, Ole, Bens, Susanne, Giefing, Maciej, Sanchez, Juan C Gonzalez, Apic, Gordana, Hubschmann, Daniel, Janz, Martin, Kreuz, Markus, Mottok, Anja, Muller, Judith M, Seufert, Julian, Hoffmann, Steve, Korbel, Jan O, Russell, Robert B, Schule, Roland, Trumper, Lorenz, Klapper, Wolfram, Radlwimmer, Bernhard, Lichter, Peter, Kuppers, Ralf, Schlesner, Matthias, Mathas, Stephan, Siebert, Reiner
Published in Haematologica (Roma) (01.02.2023)
Published in Haematologica (Roma) (01.02.2023)
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Journal Article
Therapeutic vulnerabilities in the DNA damage response for the treatment of ATRX mutant neuroblastoma
George, Sally L, Lorenzi, Federica, King, David, Hartlieb, Sabine, Campbell, James, Pemberton, Helen, Toprak, Umut H, Barker, Karen, Tall, Jennifer, da Costa, Barbara Martins, van den Boogaard, Marlinde L, Dolman, M Emmy M, Molenaar, Jan J, Bryant, Helen E, Westermann, Frank, Lord, Christopher J, Chesler, Louis
Published in EBioMedicine (01.09.2020)
Published in EBioMedicine (01.09.2020)
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Journal Article
Chiari Type 1 malformation: CSF flow dynamics and morphology in the posterior fossa and craniocervical junction and correlation of these findings with syrinx formation
Yilmaz, T.F., Toprak, H., Sari, L., Oz, I.I., Kitis, S., Kaya, A., Alkan, A.
Published in Neuro-chirurgie (01.12.2022)
Published in Neuro-chirurgie (01.12.2022)
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Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase
Maiolica, Alessio, de Medina-Redondo, Maria, Schoof, Erwin M., Chaikuad, Apirat, Villa, Fabrizio, Gatti, Marco, Jeganathan, Siva, Lou, Hua Jane, Novy, Karel, Hauri, Simon, Toprak, Umut H., Herzog, Franz, Meraldi, Patrick, Penengo, Lorenza, Turk, Benjamin E., Knapp, Stefan, Linding, Rune, Aebersold, Ruedi
Published in Molecular & cellular proteomics (01.07.2014)
Published in Molecular & cellular proteomics (01.07.2014)
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The post-operative analgesic effects of a combination of gabapentin and paracetamol in patients undergoing abdominal hysterectomy: a randomized clinical trial
Durmus, M., Kadir But, A., Saricicek, V., Ilksen Toprak, H., Ozcan Ersoy, M.
Published in Acta anaesthesiologica Scandinavica (01.03.2007)
Published in Acta anaesthesiologica Scandinavica (01.03.2007)
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Journal Article
Abstract 2696: Four new brain tumor entities emerge from molecular classification of CNS-PNETs
Sturm, Dominik, Orr, Brent, Toprak, Umut H., Hovestadt, Volker, Jones, David T.W., Capper, David, Lichter, Peter, Korshunov, Andrey, Pfister, Stefan M., Ellison, David W., Kool, Marcel
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
A novel AVP gene mutation in a Turkish family with neurohypophyseal diabetes insipidus
Ilhan, M., Tiryakioglu, N. O., Karaman, O., Coskunpinar, E., Yildiz, R. S., Turgut, S., Tiryakioglu, D., Toprak, H., Tasan, E.
Published in Journal of endocrinological investigation (01.03.2016)
Published in Journal of endocrinological investigation (01.03.2016)
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Journal Article
Control of shivering during regional anaesthesia: prophylactic ketamine and granisetron
Sagir, O., Gulhas, N., Toprak, H., Yucel, A., Begec, Z., Ersoy, O.
Published in Acta anaesthesiologica Scandinavica (01.01.2007)
Published in Acta anaesthesiologica Scandinavica (01.01.2007)
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