Assessment of Bona Fide sRNAs in Staphylococcus aureus
Liu, Wenfeng, Rochat, Tatiana, Toffano-Nioche, Claire, Le Lam, Thao Nguyen, Bouloc, Philippe, Morvan, Claire
Published in Frontiers in microbiology (20.02.2018)
Published in Frontiers in microbiology (20.02.2018)
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Transinteractome analysis reveals distinct niche requirements for isotype-based plasma cell subsets in the bone marrow
Bonaud, Amélie, Larraufie, Pierre, Khamyath, Mélanie, Szachnowski, Ugo, Flint, Shaun M, Brunel-Meunier, Nadège, Delhommeau, François, Munier, Annie, Lönnberg, Tapio, Toffano-Nioche, Claire, Gautheret, Daniel, Balabanian, Karl, Espéli, Marion
Published in European journal of immunology (01.09.2023)
Published in European journal of immunology (01.09.2023)
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Journal Article
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
Couvin, David, Bernheim, Aude, Toffano-Nioche, Claire, Touchon, Marie, Michalik, Juraj, Néron, Bertrand, Rocha, Eduardo P C, Vergnaud, Gilles, Gautheret, Daniel, Pourcel, Christine
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
Kalvari, Ioanna, Nawrocki, Eric P, Ontiveros-Palacios, Nancy, Argasinska, Joanna, Lamkiewicz, Kevin, Marz, Manja, Griffiths-Jones, Sam, Toffano-Nioche, Claire, Gautheret, Daniel, Weinberg, Zasha, Rivas, Elena, Eddy, Sean R, Finn, Robert D, Bateman, Alex, Petrov, Anton I
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Web Resource
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
Pourcel, Christine, Touchon, Marie, Villeriot, Nicolas, Vernadet, Jean-Philippe, Couvin, David, Toffano-Nioche, Claire, Vergnaud, Gilles
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis
Deveaux, Yves, Toffano-Nioche, Claire, Claisse, Gaelle, Thareau, Vincent, Morin, Halima, Laufs, Patrick, Moreau, Hervé, Kreis, Martin, Lecharny, Alain
Published in BMC evolutionary biology (24.10.2008)
Published in BMC evolutionary biology (24.10.2008)
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Journal Article
Formation of the Arabidopsis Pentatricopeptide Repeat Family
Rivals, Eric, Bruyère, Clémence, Toffano-Nioche, Claire, Lecharny, Alain
Published in Plant physiology (Bethesda) (01.07.2006)
Published in Plant physiology (Bethesda) (01.07.2006)
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DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes
Mingam, Annaïck, Toffano-Nioche, Claire, Brunaud, Véronique, Boudet, Nathalie, Kreis, Martin, Lecharny, Alain
Published in Plant biotechnology journal (01.09.2004)
Published in Plant biotechnology journal (01.09.2004)
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Genomic Exploration of the Hemiascomycetous Yeasts: 4. The genome of Saccharomyces cerevisiae revisited
Blandin, Gaëlle, Durrens, Pascal, Tekaia, Fredj, Aigle, Michel, Bolotin-Fukuhara, Monique, Bon, Elisabeth, Casarégola, Serge, de Montigny, Jacky, Gaillardin, Claude, Lépingle, Andrée, Llorente, Bertrand, Malpertuy, Alain, Neuvéglise, Cécile, Ozier-Kalogeropoulos, Odile, Perrin, Arnaud, Potier, Serge, Souciet, Jean-Luc, Talla, Emmanuel, Toffano-Nioche, Claire, Wésolowski-Louvel, Micheline, Marck, Christian, Dujon, Bernard
Published in FEBS letters (22.12.2000)
Published in FEBS letters (22.12.2000)
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Genomic Exploration of the Hemiascomycetous Yeasts: 11. Kluyveromyces lactis
Bolotin-Fukuhara, Monique, Toffano-Nioche, Claire, Artiguenave, François, Duchateau-Nguyen, Guillemette, Lemaire, Marc, Marmeisse, Roland, Montrocher, Robert, Robert, Catherine, Termier, Michel, Wincker, Patrick, Wésolowski-Louvel, Micheline
Published in FEBS letters (22.12.2000)
Published in FEBS letters (22.12.2000)
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Journal Article
Genomic Exploration of the Hemiascomycetous Yeasts: 3. Methods and strategies used for sequence analysis and annotation
Tekaia, Fredj, Blandin, Gaëlle, Malpertuy, Alain, Llorente, Bertrand, Durrens, Pascal, Toffano-Nioche, Claire, Ozier-Kalogeropoulos, Odile, Bon, Elisabeth, Gaillardin, Claude, Aigle, Michel, Bolotin-Fukuhara, Monique, Casarégola, Serge, de Montigny, Jacky, Lépingle, Andrée, Neuvéglise, Cécile, Potier, Serge, Souciet, Jean-Luc, Wésolowski-Louvel, Micheline, Dujon, Bernard
Published in FEBS letters (22.12.2000)
Published in FEBS letters (22.12.2000)
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Journal Article
FAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biology
Denecker, Thomas, Toffano-Nioche, Claire
Published in JOSE - Journal of Open Source Education (26.08.2021)
Published in JOSE - Journal of Open Source Education (26.08.2021)
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Journal Article
Staphylococcal aconitase expression during iron deficiency is controlled by an sRNA-driven feedforward loop and moonlighting activity
Barrault, Maxime, Chabelskaya, Svetlana, Coronel-Tellez, Rodrigo H, Toffano-Nioche, Claire, Jacquet, Eric, Bouloc, Philippe
Published in Nucleic acids research (12.08.2024)
Published in Nucleic acids research (12.08.2024)
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Journal Article
The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in Staphylococcus aureus
Rochat, Tatiana, Bohn, Chantal, Morvan, Claire, Le Lam, Thao Nguyen, Razvi, Fareha, Pain, Adrien, Toffano-Nioche, Claire, Ponien, Prishila, Jacq, Annick, Jacquet, Eric, Fey, Paul D, Gautheret, Daniel, Bouloc, Philippe
Published in Nucleic acids research (28.09.2018)
Published in Nucleic acids research (28.09.2018)
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Journal Article
Another example of enzymatic promiscuity: the polyphosphate kinase of Streptomyces lividans is endowed with phospholipase D activity
Esnault, Catherine, Leiber, Denis, Toffano-Nioche, Claire, Tanfin, Zahra, Virolle, Marie-Joelle
Published in Applied microbiology and biotechnology (01.01.2017)
Published in Applied microbiology and biotechnology (01.01.2017)
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Identification of RNAs bound by Hfq reveals widespread RNA partners and a sporulation regulator in the human pathogen Clostridioides difficile
Boudry, Pierre, Piattelli, Emma, Drouineau, Emilie, Peltier, Johann, Boutserin, Anaïs, Lejars, Maxence, Hajnsdorf, Eliane, Monot, Marc, Dupuy, Bruno, Martin-Verstraete, Isabelle, Gautheret, Daniel, Toffano-Nioche, Claire, Soutourina, Olga
Published in RNA biology (02.11.2021)
Published in RNA biology (02.11.2021)
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