Origin of strigolactones in the green lineage
Delaux, Pierre‐Marc, Xie, Xiaonan, Timme, Ruth E, Puech‐Pages, Virginie, Dunand, Christophe, Lecompte, Emilie, Delwiche, Charles F, Yoneyama, Koichi, Bécard, Guillaume, Séjalon‐Delmas, Nathalie
Published in The New phytologist (01.09.2012)
Published in The New phytologist (01.09.2012)
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Journal Article
Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates
Lomonaco, Sara, Crawford, Matthew A, Lascols, Christine, Timme, Ruth E, Anderson, Kevin, Hodge, David R, Fisher, Debra J, Pillai, Segaran P, Morse, Stephen A, Khan, Erum, Hughes, Molly A, Allard, Marc W, Sharma, Shashi K
Published in PloS one (08.06.2018)
Published in PloS one (08.06.2018)
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Journal Article
Multigene Phylogeny of the Green Lineage Reveals the Origin and Diversification of Land Plants
Finet, Cédric, Timme, Ruth E., Delwiche, Charles F., Marlétaz, Ferdinand
Published in Current biology (21.12.2010)
Published in Current biology (21.12.2010)
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Journal Article
Unraveling the Evolution of Auxin Signaling
De Smet, Ive, Voβ, Ute, Lau, Steffen, Wilson, Michael, Shao, Ning, Timme, Ruth E., Swarup, Ranjan, Kerr, Ian, Hodgman, Charlie, Bock, Ralph, Bennett, Malcolm, Jürgens, Gerd, Beeckman, Tom
Published in Plant physiology (Bethesda) (01.01.2011)
Published in Plant physiology (Bethesda) (01.01.2011)
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Journal Article
Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens
Timme, Ruth E, Wolfgang, William J, Balkey, Maria, Venkata, Sai Laxmi Gubbala, Randolph, Robyn, Allard, Marc, Strain, Errol
Published in One health outlook (19.10.2020)
Published in One health outlook (19.10.2020)
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Journal Article
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples
Kayikcioglu, Tunc, Amirzadegan, Jasmine, Rand, Hugh, Tesfaldet, Bereket, Timme, Ruth E, Pettengill, James B
Published in PeerJ (San Francisco, CA) (26.01.2023)
Published in PeerJ (San Francisco, CA) (26.01.2023)
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Journal Article
Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters
Timme, Ruth E, Pettengill, James B, Allard, Marc W, Strain, Errol, Barrangou, Rodolphe, Wehnes, Chris, Van Kessel, Joann S, Karns, Jeffrey S, Musser, Steven M, Brown, Eric W
Published in Genome biology and evolution (01.01.2013)
Published in Genome biology and evolution (01.01.2013)
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Journal Article
Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars
Pirone-Davies, Cary, Hoffmann, Maria, Roberts, Richard J, Muruvanda, Tim, Timme, Ruth E, Strain, Errol, Luo, Yan, Payne, Justin, Luong, Khai, Song, Yi, Tsai, Yu-Chih, Boitano, Matthew, Clark, Tyson A, Korlach, Jonas, Evans, Peter S, Allard, Marc W
Published in PloS one (10.04.2015)
Published in PloS one (10.04.2015)
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Journal Article
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
Timme, Ruth E, Rand, Hugh, Shumway, Martin, Trees, Eija K, Simmons, Mustafa, Agarwala, Richa, Davis, Steven, Tillman, Glenn E, Defibaugh-Chavez, Stephanie, Carleton, Heather A, Klimke, William A, Katz, Lee S
Published in PeerJ (San Francisco, CA) (06.10.2017)
Published in PeerJ (San Francisco, CA) (06.10.2017)
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Journal Article
Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
Timme, Ruth E, Lafon, Patricia C, Balkey, Maria, Adams, Jennifer K, Wagner, Darlene, Carleton, Heather, Strain, Errol, Hoffmann, Maria, Sabol, Ashley, Rand, Hugh, Lindsey, Rebecca, Sheehan, Deborah, Baugher, Joseph D, Trees, Eija
Published in Scientific data (19.11.2020)
Published in Scientific data (19.11.2020)
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Journal Article
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities
Vangay, Pajau, Burgin, Josephine, Johnston, Anjanette, Beck, Kristen L, Berrios, Daniel C, Blumberg, Kai, Canon, Shane, Chain, Patrick, Chandonia, John-Marc, Christianson, Danielle, Costes, Sylvain V, Damerow, Joan, Duncan, William D, Dundore-Arias, Jose Pablo, Fagnan, Kjiersten, Galazka, Jonathan M, Gibbons, Sean M, Hays, David, Hervey, Judson, Hu, Bin, Hurwitz, Bonnie L, Jaiswal, Pankaj, Joachimiak, Marcin P, Kinkel, Linda, Ladau, Joshua, Martin, Stanton L, McCue, Lee Ann, Miller, Kayd, Mouncey, Nigel, Mungall, Chris, Pafilis, Evangelos, Reddy, T B K, Richardson, Lorna, Roux, Simon, Schriml, Lynn M., Shaffer, Justin P, Sundaramurthi, Jagadish Chandrabose, Thompson, Luke R, Timme, Ruth E, Zheng, Jie, Wood-Charlson, Elisha M, Eloe-Fadrosh, Emiley A
Published in mSystems (23.02.2021)
Published in mSystems (23.02.2021)
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Journal Article
Multigene Phylogeny of the Green Lineage Reveals the Origin and Diversification of Land Plants
Finet, Cédric, Timme, Ruth E., Delwiche, Charles F., Marlétaz, Ferdinand
Published in Current biology (07.08.2012)
Published in Current biology (07.08.2012)
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Journal Article
SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA's GenomeTrakr network
Timme, Ruth E, Woods, Jacquelina, Jones, Jessica L, Calci, Kevin R, Rodriguez, Rachel, Barnes, Candace, Leard, Elizabeth, Craven, Mark, Chen, Haifeng, Boerner, Cameron, Grim, Christopher, Windsor, Amanda M, Ramachandran, Padmini, Muruvanda, Tim, Rand, Hugh, Tesfaldet, Bereket, Amirzadegan, Jasmine, Kayikcioglu, Tunc, Walsky, Tamara, Allard, Marc, Balkey, Maria, Bias, C Hope, Brown, Eric, Judy, Kathryn, Pfefer, Tina, Tallent, Sandra M, Hoffmann, Maria, Pettengill, James
Published in mSystems (18.06.2024)
Published in mSystems (18.06.2024)
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Journal Article
Draft Genome Sequences of 21 Salmonella enterica Serovar Enteritidis Strains
Timme, Ruth E, Allard, Marc W, Luo, Yan, Strain, Errol, Pettengill, James, Wang, Charles, Li, Cong, Keys, Christine E, Zheng, Jie, Stones, Robert, Wilson, Mark R, Musser, Steven M, Brown, Eric W
Published in Journal of Bacteriology (01.11.2012)
Published in Journal of Bacteriology (01.11.2012)
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Journal Article
The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica
Pettengill, James B, Timme, Ruth E, Barrangou, Rodolphe, Toro, Magaly, Allard, Marc W, Strain, Errol, Musser, Steven M, Brown, Eric W
Published in PeerJ (San Francisco, CA) (17.04.2014)
Published in PeerJ (San Francisco, CA) (17.04.2014)
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Journal Article