The Landscape of Genetic Content in the Gut and Oral Human Microbiome
Tierney, Braden T., Yang, Zhen, Luber, Jacob M., Beaudin, Marc, Wibowo, Marsha C., Baek, Christina, Mehlenbacher, Eleanor, Patel, Chirag J., Kostic, Aleksandar D.
Published in Cell host & microbe (14.08.2019)
Published in Cell host & microbe (14.08.2019)
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Journal Article
Reconstruction of ancient microbial genomes from the human gut
Wibowo, Marsha C, Yang, Zhen, Borry, Maxime, Hübner, Alexander, Huang, Kun D, Tierney, Braden T, Zimmerman, Samuel, Barajas-Olmos, Francisco, Contreras-Cubas, Cecilia, García-Ortiz, Humberto, Martínez-Hernández, Angélica, Luber, Jacob M, Kirstahler, Philipp, Blohm, Tre, Smiley, Francis E, Arnold, Richard, Ballal, Sonia A, Pamp, Sünje Johanna, Russ, Julia, Maixner, Frank, Rota-Stabelli, Omar, Segata, Nicola, Reinhard, Karl, Orozco, Lorena, Warinner, Christina, Snow, Meradeth, LeBlanc, Steven, Kostic, Aleksandar D
Published in Nature (London) (10.06.2021)
Published in Nature (London) (10.06.2021)
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Journal Article
Leveraging vibration of effects analysis for robust discovery in observational biomedical data science
Tierney, Braden T., Anderson, Elizabeth, Tan, Yingxuan, Claypool, Kajal, Tangirala, Sivateja, Kostic, Aleksandar D., Manrai, Arjun K., Patel, Chirag J.
Published in PLoS biology (23.09.2021)
Published in PLoS biology (23.09.2021)
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Journal Article
Collection of biospecimens from the inspiration4 mission establishes the standards for the space omics and medical atlas (SOMA)
Overbey, Eliah G, Ryon, Krista, Kim, JangKeun, Tierney, Braden T, Klotz, Remi, Ortiz, Veronica, Mullane, Sean, Schmidt, Julian C, MacKay, Matthew, Damle, Namita, Najjar, Deena, Matei, Irina, Patras, Laura, Garcia Medina, J. Sebastian, Kleinman, Ashley S, Wain Hirschberg, Jeremy, Proszynski, Jacqueline, Narayanan, S. Anand, Schmidt, Caleb M, Afshin, Evan E, Innes, Lucinda, Saldarriaga, Mateo Mejia, Schmidt, Michael A, Granstein, Richard D, Shirah, Bader, Yu, Min, Lyden, David, Mateus, Jaime, Mason, Christopher E
Published in Nature communications (11.06.2024)
Published in Nature communications (11.06.2024)
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Journal Article
Publisher Correction: Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium
Flores, Vinicius S, Amgarten, Deyvid E, Iha, Bruno Koshin Vázquez, Ryon, Krista A, Danko, David, Tierney, Braden T, Mason, Christopher, da Silva, Aline Maria, Setubal, João Carlos
Published in Scientific reports (10.05.2024)
Published in Scientific reports (10.05.2024)
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Journal Article
Spatial multi-omics of human skin reveals KRAS and inflammatory responses to spaceflight
Park, Jiwoon, Overbey, Eliah G, Narayanan, S. Anand, Kim, JangKeun, Tierney, Braden T, Damle, Namita, Najjar, Deena, Ryon, Krista A, Proszynski, Jacqueline, Kleinman, Ashley, Hirschberg, Jeremy Wain, MacKay, Matthew, Afshin, Evan E, Granstein, Richard, Gurvitch, Justin, Hudson, Briana M, Rininger, Aric, Mullane, Sean, Church, Sarah E, Meydan, Cem, Church, George, Beheshti, Afshin, Mateus, Jaime, Mason, Christopher E
Published in Nature communications (11.06.2024)
Published in Nature communications (11.06.2024)
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Journal Article
Spatiotemporal expression and control of haemoglobin in space
Borg, Josef, Loy, Conor, Kim, JangKeun, Buhagiar, Alfred, Chin, Christopher, Damle, Namita, De Vlaminck, Iwijn, Felice, Alex, Liu, Tammy, Matei, Irina, Meydan, Cem, Muratani, Masafumi, Mzava, Omary, Overbey, Eliah, Ryon, Krista A, Smith, Scott M, Tierney, Braden T, Trudel, Guy, Zwart, Sara R, Beheshti, Afshin, Mason, Christopher E, Borg, Joseph
Published in Nature communications (11.06.2024)
Published in Nature communications (11.06.2024)
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Journal Article
Protective alleles and precision healthcare in crewed spaceflight
Rutter, Lindsay A, MacKay, Matthew J, Cope, Henry, Szewczyk, Nathaniel J, Kim, JangKeun, Overbey, Eliah, Tierney, Braden T, Muratani, Masafumi, Lamm, Ben, Bezdan, Daniela, Paul, Amber M, Schmidt, Michael A, Church, George M, Giacomello, Stefania, Mason, Christopher E
Published in Nature communications (22.07.2024)
Published in Nature communications (22.07.2024)
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Journal Article
Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium
Flores, Vinicius S, Amgarten, Deyvid E, Iha, Bruno Koshin Vázquez, Ryon, Krista A, Danko, David, Tierney, Braden T, Mason, Christopher, da Silva, Aline Maria, Setubal, João Carlos
Published in Scientific reports (04.04.2024)
Published in Scientific reports (04.04.2024)
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Journal Article
A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type
Le Goallec, Alan, Tierney, Braden T, Luber, Jacob M, Cofer, Evan M, Kostic, Aleksandar D, Patel, Chirag J
Published in PLoS computational biology (01.05.2020)
Published in PLoS computational biology (01.05.2020)
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Journal Article
Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis
Islam, Md Zohorul, Tran, Melissa, Xu, Tao, Tierney, Braden T, Patel, Chirag, Kostic, Aleksandar David
Published in Microbiome (09.12.2022)
Published in Microbiome (09.12.2022)
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Journal Article
The microbial biodiversity at the archeological site of Tel Megiddo (Israel)
Zhang, Yali, Ruff, S. Emil, Oskolkov, Nikolay, Tierney, Braden T., Ryon, Krista, Danko, David, Mason, Christopher E., Elhaik, Eran
Published in Frontiers in microbiology (22.09.2023)
Published in Frontiers in microbiology (22.09.2023)
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Journal Article
Systematically assessing microbiome-disease associations identifies drivers of inconsistency in metagenomic research
Tierney, Braden T, Tan, Yingxuan, Yang, Zhen, Shui, Bing, Walker, Michaela J, Kent, Benjamin M, Kostic, Aleksandar D, Patel, Chirag J
Published in PLoS biology (02.03.2022)
Published in PLoS biology (02.03.2022)
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Journal Article
Multidrug-resistant Acinetobacter pittii is adapting to and exhibiting potential succession aboard the International Space Station
Tierney, Braden T, Singh, Nitin K, Simpson, Anna C, Hujer, Andrea M, Bonomo, Robert A, Mason, Christopher E, Venkateswaran, Kasthuri
Published in Microbiome (12.12.2022)
Published in Microbiome (12.12.2022)
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Journal Article
Prioritization of COVID-19 risk factors in July 2020 and February 2021 in the UK
Tangirala, Sivateja, Tierney, Braden T, Patel, Chirag J
Published in Communications medicine (30.03.2023)
Published in Communications medicine (30.03.2023)
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Journal Article
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems
Zimmerman, Samuel, Tierney, Braden T, Patel, Chirag J, Kostic, Aleksandar D
Published in mSystems (27.04.2023)
Published in mSystems (27.04.2023)
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Journal Article
Supervised Machine Learning Enables Geospatial Microbial Provenance
Bhattacharya, Chandrima, Tierney, Braden T, Ryon, Krista A, Bhattacharyya, Malay, Hastings, Jaden J A, Basu, Srijani, Bhattacharya, Bodhisatwa, Bagchi, Debneel, Mukherjee, Somsubhro, Wang, Lu, Henaff, Elizabeth M, Mason, Christopher E
Published in Genes (21.10.2022)
Published in Genes (21.10.2022)
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Journal Article
Removal of a Membrane Anchor Reveals the Opposing Regulatory Functions of Vibrio cholerae Glucose-Specific Enzyme IIA in Biofilms and the Mammalian Intestine
Vijayakumar, Vidhya, Vanhove, Audrey S, Pickering, Bradley S, Liao, Julie, Tierney, Braden T, Asara, John M, Bronson, Roderick, Watnick, Paula I
Published in mBio (04.09.2018)
Published in mBio (04.09.2018)
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Journal Article