A general framework for quantitatively assessing ecological stochasticity
Ning, Daliang, Deng, Ye, Tiedje, James M., Zhou, Jizhong
Published in Proceedings of the National Academy of Sciences - PNAS (20.08.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (20.08.2019)
Get full text
Journal Article
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming
Xue, Kai, M. Yuan, Mengting, J. Shi, Zhou, Qin, Yujia, Deng, Ye, Cheng, Lei, Wu, Liyou, He, Zhili, Van Nostrand, Joy D., Bracho, Rosvel, Natali, Susan, Schuur, Edward. A. G., Luo, Chengwei, Konstantinidis, Konstantinos T., Wang, Qiong, Cole, James R., Tiedje, James M., Luo, Yiqi, Zhou, Jizhong
Published in Nature climate change (01.06.2016)
Published in Nature climate change (01.06.2016)
Get full text
Journal Article
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
Li, Bing, Yang, Ying, Ma, Liping, Ju, Feng, Guo, Feng, Tiedje, James M, Zhang, Tong
Published in The ISME Journal (01.11.2015)
Published in The ISME Journal (01.11.2015)
Get full text
Journal Article
ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes
Yin, Xiaole, Jiang, Xiao-Tao, Chai, Benli, Li, Liguan, Yang, Ying, Cole, James R, Tiedje, James M, Zhang, Tong
Published in Bioinformatics (01.07.2018)
Published in Bioinformatics (01.07.2018)
Get full text
Journal Article
Climate warming enhances microbial network complexity and stability
Yuan, Mengting Maggie, Guo, Xue, Wu, Linwei, Zhang, Ya, Xiao, Naijia, Ning, Daliang, Shi, Zhou, Zhou, Xishu, Wu, Liyou, Yang, Yunfeng, Tiedje, James M., Zhou, Jizhong
Published in Nature climate change (01.04.2021)
Published in Nature climate change (01.04.2021)
Get full text
Journal Article
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level
Rodriguez-R, Luis M, Gunturu, Santosh, Harvey, William T, Rosselló-Mora, Ramon, Tiedje, James M, Cole, James R, Konstantinidis, Konstantinos T
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
Get full text
Journal Article
The soil microbial carbon pump: From conceptual insights to empirical assessments
Zhu, Xuefeng, Jackson, Randall D., DeLucia, Evan H., Tiedje, James M., Liang, Chao
Published in Global change biology (01.11.2020)
Published in Global change biology (01.11.2020)
Get full text
Journal Article
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution
Gillings, Michael R, Gaze, William H, Pruden, Amy, Smalla, Kornelia, Tiedje, James M, Zhu, Yong-Guan
Published in The ISME Journal (01.06.2015)
Published in The ISME Journal (01.06.2015)
Get full text
Journal Article
Diverse and abundant antibiotic resistance genes in Chinese swine farms
Zhu, Yong-Guan, Johnson, Timothy A., Su, Jian-Qiang, Qiao, Min, Guo, Guang-Xia, Stedtfeld, Robert D., Hashsham, Syed A., Tiedje, James M.
Published in Proceedings of the National Academy of Sciences - PNAS (26.02.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (26.02.2013)
Get full text
Journal Article
An omics-based framework for assessing the health risk of antimicrobial resistance genes
Zhang, An-Ni, Gaston, Jeffry M., Dai, Chengzhen L., Zhao, Shijie, Poyet, Mathilde, Groussin, Mathieu, Yin, Xiaole, Li, Li-Guan, van Loosdrecht, Mark C. M., Topp, Edward, Gillings, Michael R., Hanage, William P., Tiedje, James M., Moniz, Katya, Alm, Eric J., Zhang, Tong
Published in Nature communications (06.08.2021)
Published in Nature communications (06.08.2021)
Get full text
Journal Article
ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database
Yang, Ying, Jiang, Xiaotao, Chai, Benli, Ma, Liping, Li, Bing, Zhang, Anni, Cole, James R, Tiedje, James M, Zhang, Tong
Published in Bioinformatics (Oxford, England) (01.08.2016)
Published in Bioinformatics (Oxford, England) (01.08.2016)
Get full text
Journal Article
Strategy for Mitigating Antibiotic Resistance by Biochar and Hyperaccumulators in Cadmium and Oxytetracycline Co-contaminated Soil
Fu, Yuhao, Jia, Mingyun, Wang, Fang, Wang, Ziquan, Mei, Zhi, Bian, Yongrong, Jiang, Xin, Virta, Marko, Tiedje, James M
Published in Environmental science & technology (21.12.2021)
Published in Environmental science & technology (21.12.2021)
Get full text
Journal Article
Ribosomal Database Project: data and tools for high throughput rRNA analysis
Cole, James R, Wang, Qiong, Fish, Jordan A, Chai, Benli, McGarrell, Donna M, Sun, Yanni, Brown, C Titus, Porras-Alfaro, Andrea, Kuske, Cheryl R, Tiedje, James M
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
Get full text
Journal Article
FunGene: the functional gene pipeline and repository
Fish, Jordan A, Chai, Benli, Wang, Qiong, Sun, Yanni, Brown, C Titus, Tiedje, James M, Cole, James R
Published in Frontiers in microbiology (2013)
Published in Frontiers in microbiology (2013)
Get full text
Journal Article
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
Zhou, Jizhong, Deng, Ye, Zhang, Ping, Xue, Kai, Liang, Yuting, Van Nostrand, Joy D, Yang, Yunfeng, He, Zhili, Wu, Liyou, Stahl, David A, Hazen, Terry C, Tiedje, James M, Arkin, Adam P
Published in Proceedings of the National Academy of Sciences - PNAS (04.03.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (04.03.2014)
Get full text
Journal Article
Cellulosic biofuel contributions to a sustainable energy future: Choices and outcomes
Robertson, G. Philip, Hamilton, Stephen K., Barham, Bradford L., Dale, Bruce E., Izaurralde, R. Cesar, Jackson, Randall D., Landis, Douglas A., Swinton, Scott M., Thelen, Kurt D., Tiedje, James M.
Published in Science (American Association for the Advancement of Science) (30.06.2017)
Published in Science (American Association for the Advancement of Science) (30.06.2017)
Get full text
Journal Article