Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
Sievers, Fabian, Wilm, Andreas, Dineen, David, Gibson, Toby J, Karplus, Kevin, Li, Weizhong, Lopez, Rodrigo, McWilliam, Hamish, Remmert, Michael, Söding, Johannes, Thompson, Julie D, Higgins, Desmond G
Published in Molecular systems biology (11.10.2011)
Published in Molecular systems biology (11.10.2011)
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Journal Article
A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms
Scalzitti, Nicolas, Jeannin-Girardon, Anne, Collet, Pierre, Poch, Olivier, Thompson, Julie D
Published in BMC genomics (09.04.2020)
Published in BMC genomics (09.04.2020)
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Journal Article
A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives
Thompson, Julie D, Linard, Benjamin, Lecompte, Odile, Poch, Olivier
Published in PloS one (31.03.2011)
Published in PloS one (31.03.2011)
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Journal Article
Spliceator: multi-species splice site prediction using convolutional neural networks
Scalzitti, Nicolas, Kress, Arnaud, Orhand, Romain, Weber, Thomas, Moulinier, Luc, Jeannin-Girardon, Anne, Collet, Pierre, Poch, Olivier, Thompson, Julie D
Published in BMC bioinformatics (23.11.2021)
Published in BMC bioinformatics (23.11.2021)
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Journal Article
OrthoInspector 3.0: open portal for comparative genomics
Nevers, Yannis, Kress, Arnaud, Defosset, Audrey, Ripp, Raymond, Linard, Benjamin, Thompson, Julie D, Poch, Olivier, Lecompte, Odile
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
BAliBASE 3.0: Latest developments of the multiple sequence alignment benchmark
Thompson, Julie D., Koehl, Patrice, Ripp, Raymond, Poch, Olivier
Published in Proteins, structure, function, and bioinformatics (01.10.2005)
Published in Proteins, structure, function, and bioinformatics (01.10.2005)
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Journal Article
OrthoInspector: comprehensive orthology analysis and visual exploration
Linard, Benjamin, Thompson, Julie D, Poch, Olivier, Lecompte, Odile
Published in BMC bioinformatics (10.01.2011)
Published in BMC bioinformatics (10.01.2011)
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Journal Article
PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
Gouret, Philippe, Thompson, Julie D, Pontarotti, Pierre
Published in BMC bioinformatics (19.09.2009)
Published in BMC bioinformatics (19.09.2009)
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Journal Article
CeGAL: Redefining a Widespread Fungal-Specific Transcription Factor Family Using an In Silico Error-Tracking Approach
Mayer, Claudine, Vogt, Arthur, Uslu, Tuba, Scalzitti, Nicolas, Chennen, Kirsley, Poch, Olivier, Thompson, Julie D
Published in Journal of fungi (Basel) (29.03.2023)
Published in Journal of fungi (Basel) (29.03.2023)
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Journal Article
Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism
De Craene, Johan-Owen, Ripp, Raymond, Lecompte, Odile, Thompson, Julie D, Poch, Olivier, Friant, Sylvie
Published in BMC genomics (02.07.2012)
Published in BMC genomics (02.07.2012)
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Journal Article
Multiple sequence alignment using ClustalW and ClustalX
Thompson, Julie D, Gibson, Toby J, Higgins, Des G
Published in Current protocols in bioinformatics (01.08.2002)
Published in Current protocols in bioinformatics (01.08.2002)
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Journal Article
OrthoInspector 2.0: Software and database updates
Linard, Benjamin, Allot, Alexis, Schneider, Raphaël, Morel, Can, Ripp, Raymond, Bigler, Marc, Thompson, Julie D, Poch, Olivier, Lecompte, Odile
Published in Bioinformatics (01.02.2015)
Published in Bioinformatics (01.02.2015)
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Journal Article
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods
Ruano-Rubio, Valentín, Poch, Olivier, Thompson, Julie D
Published in BMC bioinformatics (24.11.2009)
Published in BMC bioinformatics (24.11.2009)
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