Origin and evolution of the octoploid strawberry genome
Edger, Patrick P., Poorten, Thomas J., VanBuren, Robert, Hardigan, Michael A., Colle, Marivi, McKain, Michael R., Smith, Ronald D., Teresi, Scott J., Nelson, Andrew D. L., Wai, Ching Man, Alger, Elizabeth I., Bird, Kevin A., Yocca, Alan E., Pumplin, Nathan, Ou, Shujun, Ben-Zvi, Gil, Brodt, Avital, Baruch, Kobi, Swale, Thomas, Shiue, Lily, Acharya, Charlotte B., Cole, Glenn S., Mower, Jeffrey P., Childs, Kevin L., Jiang, Ning, Lyons, Eric, Freeling, Michael, Puzey, Joshua R., Knapp, Steven J.
Published in Nature genetics (01.03.2019)
Published in Nature genetics (01.03.2019)
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Journal Article
Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity
Low, Wai Yee, Tearle, Rick, Bickhart, Derek M., Rosen, Benjamin D., Kingan, Sarah B., Swale, Thomas, Thibaud-Nissen, Françoise, Murphy, Terence D., Young, Rachel, Lefevre, Lucas, Hume, David A., Collins, Andrew, Ajmone-Marsan, Paolo, Smith, Timothy P. L., Williams, John L.
Published in Nature communications (16.01.2019)
Published in Nature communications (16.01.2019)
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Journal Article
Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing
Nong, Wenyan, Cao, Jianquan, Li, Yiqian, Qu, Zhe, Sun, Jin, Swale, Thomas, Yip, Ho Yin, Qian, Pei Yuan, Qiu, Jian-Wen, Kwan, Hoi Shan, Bendena, William, Tobe, Stephen, Chan, Ting Fung, Yip, Kevin Y., Chu, Ka Hou, Ngai, Sai Ming, Tsim, Karl Yk, Holland, Peter W. H., Hui, Jerome H. L.
Published in Nature communications (19.06.2020)
Published in Nature communications (19.06.2020)
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Journal Article
Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome
Li, Yiqian, Nong, Wenyan, Baril, Tobias, Yip, Ho Yin, Swale, Thomas, Hayward, Alexander, Ferrier, David E K, Hui, Jerome H L
Published in BMC genomics (15.10.2020)
Published in BMC genomics (15.10.2020)
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Journal Article
Myriapod genomes reveal ancestral horizontal gene transfer and hormonal gene loss in millipedes
So, Wai Lok, Nong, Wenyan, Xie, Yichun, Baril, Tobias, Ma, Hai-yao, Qu, Zhe, Haimovitz, Jasmine, Swale, Thomas, Gaitan-Espitia, Juan Diego, Lau, Kwok Fai, Tobe, Stephen S., Bendena, William G., Kai, Zhen-peng, Hayward, Alexander, Hui, Jerome H. L.
Published in Nature communications (30.05.2022)
Published in Nature communications (30.05.2022)
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Elucidating the ecophysiology of soybean pod-sucking stinkbug Riptortus pedestris (Hemiptera: Alydidae) based on de novo genome assembly and transcriptome analysis
Li, Chade, Nong, Wenyan, Boncan, Delbert Almerick T, So, Wai Lok, Yip, Ho Yin, Swale, Thomas, Jia, Qi, Vicentin, Ignacio G, Chung, Gyuhwa, Bendena, William G, Ngo, Jacky C K, Chan, Ting Fung, Lam, Hon-Ming, Hui, Jerome H L
Published in BMC genomics (02.04.2024)
Published in BMC genomics (02.04.2024)
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Journal Article
Millipede genomes reveal unique adaptations during myriapod evolution
Qu, Zhe, Nong, Wenyan, So, Wai Lok, Barton-Owen, Tom, Li, Yiqian, Leung, Thomas C. N., Li, Chade, Baril, Tobias, Wong, Annette Y. P., Swale, Thomas, Chan, Ting-Fung, Hayward, Alexander, Ngai, Sai-Ming, Hui, Jerome H. L.
Published in PLoS biology (29.09.2020)
Published in PLoS biology (29.09.2020)
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Journal Article
The genome and sex-dependent responses to temperature in the common yellow butterfly, Eurema hecabe
Lee, Ivy H. T, Nong, Wenyan, So, Wai Lok, Cheung, Chris K. H, Xie, Yichun, Baril, Toby, Yip, Ho Yin, Swale, Thomas, Chan, Simon K. F, Wei, Yingying, Lo, Nathan, Hayward, Alexander, Chan, Ting Fung, Lam, Hon-ming, Hui, Jerome H. L
Published in BMC biology (25.09.2023)
Published in BMC biology (25.09.2023)
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A chromosome scale assembly of the tarnished plant bug, Lygus lineolaris (Palisot de Beauvois), genome
Perera, O P, Saha, Surya, Glover, James, Parys, Katherine A, Allen, K Clint, Grozeva, Snejana, Kurtz, Ryan, Reddy, Gadi V P, Johnston, J Spencer, Daly, Mark, Swale, Thomas
Published in BMC research notes (27.06.2023)
Published in BMC research notes (27.06.2023)
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Journal Article
Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry
Colle, Marivi, Leisner, Courtney P, Wai, Ching Man, Ou, Shujun, Bird, Kevin A, Wang, Jie, Wisecaver, Jennifer H, Yocca, Alan E, Alger, Elizabeth I, Tang, Haibao, Xiong, Zhiyong, Callow, Pete, Ben-Zvi, Gil, Brodt, Avital, Baruch, Kobi, Swale, Thomas, Shiue, Lily, Song, Guo-qing, Childs, Kevin L, Schilmiller, Anthony, Vorsa, Nicholi, Buell, C Robin, VanBuren, Robert, Jiang, Ning, Edger, Patrick P
Published in Gigascience (31.01.2019)
Published in Gigascience (31.01.2019)
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Journal Article
Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication
Nong, Wenyan, Qu, Zhe, Li, Yiqian, Barton-Owen, Tom, Wong, Annette Y. P., Yip, Ho Yin, Lee, Hoi Ting, Narayana, Satya, Baril, Tobias, Swale, Thomas, Cao, Jianquan, Chan, Ting Fung, Kwan, Hoi Shan, Ngai, Sai Ming, Panagiotou, Gianni, Qian, Pei-Yuan, Qiu, Jian-Wen, Yip, Kevin Y., Ismail, Noraznawati, Pati, Siddhartha, John, Akbar, Tobe, Stephen S., Bendena, William G., Cheung, Siu Gin, Hayward, Alexander, Hui, Jerome H. L.
Published in Communications biology (19.01.2021)
Published in Communications biology (19.01.2021)
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Journal Article
Genome of the sea anemone Exaiptasia pallida and transcriptome profiles during tentacle regeneration
Shum, Cheryl W.Y., Nong, Wenyan, So, Wai Lok, Li, Yiqian, Qu, Zhe, Yip, Ho Yin, Swale, Thomas, Ang, Put O., Chan, King Ming, Chan, Ting Fung, Chu, Ka Hou, Chui, Apple P.Y., Lau, Kwok Fai, Ngai, Sai Ming, Xu, Fei, Hui, Jerome H.L.
Published in Frontiers in cell and developmental biology (17.08.2022)
Published in Frontiers in cell and developmental biology (17.08.2022)
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Journal Article
Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)
Yu, Yifei, Nong, Wenyan, So, Wai Lok, Xie, Yichun, Yip, Ho Yin, Haimovitz, Jasmine, Swale, Thomas, Baker, David M., Bendena, William G., Chan, Ting Fung, Chui, Apple P. Y., Lau, Kwok Fai, Qian, Pei-Yuan, Qiu, Jian-Wen, Thibodeau, Benoit, Xu, Fei, Hui, Jerome H. L.
Published in Frontiers in Marine Science (27.09.2022)
Published in Frontiers in Marine Science (27.09.2022)
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Chromosomal-level reference genome of a wild North American mallard (Anas platyrhynchos)
Lavretsky, Philip, Hernández, Flor, Swale, Thomas, Mohl, Jonathon E
Published in G3 : genes - genomes - genetics (01.10.2023)
Published in G3 : genes - genomes - genetics (01.10.2023)
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Journal Article
Evolution of the ancestral mammalian karyotype and syntenic regions
Damas, Joana, Corbo, Marco, Kim, Jaebum, Turner-Maier, Jason, Farré, Marta, Larkin, Denis M, Ryder, Oliver A, Steiner, Cynthia, Houck, Marlys L, Hall, Shaune, Shiue, Lily, Thomas, Stephen, Swale, Thomas, Daly, Mark, Korlach, Jonas, Uliano-Silva, Marcela, Mazzoni, Camila J, Birren, Bruce W, Genereux, Diane P, Johnson, Jeremy, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Nweeia, Martin T, Johnson, Rebecca N, Lewin, Harris A
Published in Proceedings of the National Academy of Sciences - PNAS (04.10.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (04.10.2022)
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Journal Article
The genome of the deep-sea anemone Actinernus sp. contains a mega-array of ANTP-class homeobox genes
Law, Sean Tsz Sum, Yu, Yifei, Nong, Wenyan, So, Wai Lok, Li, Yiqian, Swale, Thomas, Ferrier, David E K, Qiu, Jianwen, Qian, Peiyuan, Hui, Jerome Ho Lam
Published in Proceedings of the Royal Society. B, Biological sciences (25.10.2023)
Published in Proceedings of the Royal Society. B, Biological sciences (25.10.2023)
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Journal Article
Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry
Colle, Marivi, Leisner, Courtney P, Wai, Ching Man, Ou, Shujun, Bird, Kevin A, Wang, Jie, Wisecaver, Jennifer H, Yocca, Alan E, Alger, Elizabeth I, Tang, Haibao, Xiong, Zhiyong, Callow, Pete, Ben-Zvi, Gil, Brodt, Avital, Baruch, Kobi, Swale, Thomas, Shiue, Lily, Song, Guo-qing, Childs, Kevin L, Schilmiller, Anthony, Vorsa, Nicholi, Buell, C Robin, VanBuren, Robert, Jiang, Ning, Edger, Patrick P
Published in Gigascience (01.03.2019)
Published in Gigascience (01.03.2019)
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Journal Article
Chromosome Level Genome Assembly and Annotation of Highly Invasive Japanese Stiltgrass (Microstegium vimineum)
Ramachandran, Dhanushya, Huebner, Cynthia D, Daly, Mark, Haimovitz, Jasmine, Swale, Thomas, Barrett, Craig F
Published in Genome biology and evolution (05.11.2021)
Published in Genome biology and evolution (05.11.2021)
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Journal Article
Chromosomal‐level reference genome of the incense tree Aquilaria sinensis
Nong, Wenyan, Law, Sean T. S., Wong, Annette Y. P., Baril, Tobias, Swale, Thomas, Chu, Lee Man, Hayward, Alexander, Lau, David T. W., Hui, Jerome H. L.
Published in Molecular ecology resources (01.07.2020)
Published in Molecular ecology resources (01.07.2020)
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Journal Article
Chromosomal-level reference genome of the moth Heortia vitessoides (Lepidoptera: Crambidae), a major pest of agarwood-producing trees
Law, Sean T.S., Nong, Wenyan, So, Wai Lok, Baril, Tobias, Swale, Thomas, Chan, Chi Bun, Tobe, Stephen S., Kai, Zhen-Peng, Bendena, William G., Hayward, Alexander, Hui, Jerome H.L.
Published in Genomics (San Diego, Calif.) (01.07.2022)
Published in Genomics (San Diego, Calif.) (01.07.2022)
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